Denitratisoma sp. DHT3: B9N43_05415
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Entry
B9N43_05415 CDS
T10559
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
deni Denitratisoma sp. DHT3
Pathway
deni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9N43_05415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deni03019
]
B9N43_05415
03009 Ribosome biogenesis [BR:
deni03009
]
B9N43_05415
Enzymes [BR:
deni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B9N43_05415
Messenger RNA biogenesis [BR:
deni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B9N43_05415
Ribosome biogenesis [BR:
deni03009
]
Prokaryotic type
rRNA helicases
B9N43_05415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QDX80732
LinkDB
All DBs
Position
complement(1196503..1198665)
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AA seq
720 aa
AA seq
DB search
MSAIERFDQLGLSPFLLQALETLGYETPSPIQAACIPQLLAGHDILGEAQTGTGKTAAFA
LPLLERLDLTERRPQALILTPTRELAIQVAEALQSYAHFMPGFHVLPIYGGQSMVVQLRA
LDRGAHVIVGTPGRVMDHLERKSLNLEGLKTLVLDEADEMLRMGFIDDVEWILEHTPASR
QTALFSATMPEVIRRVARTHLREPQEIKIRAATATVTTIRQRYWQATGNKLDALTRILEV
EEDFDAAIIFVRTKLATVELAEKLEARGYAAAALSGDLQQAQRERVIEQLKNKTLDIVVA
TDVAARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGRAGTAILFIAPREKRMLRVIE
RATRQPIEPMQLPSMEDVADRRVAQFKRQVVEVLGAEELGFFEDVVSQIEREQNVDTVEI
AAALAWLVQKERPLQMAPGRAADAEARVGESRPPREERPAFREERSAYREERPAVRAERP
AFGEERAFPVREERPAFGERPARHERPARPAAGGLMRYRIEVGRDHGVTPKNIVGAIANE
AGIESRYIGQINLFDSFSTVELPDSLSAELLGLLRRVRVQGRQLEIAPDHGDQPTSRSPR
GPRGGEERGGRPFSSSFHKSGGHEPARREGGFGKPPRSGGFDQPRREAGFGKPFKEGGFG
KSFKEGGHGKPFKDGGHGKPFKEGGHGKPFKEGGFAKPKREAGFDTPRKPGVVHKGKRHS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccatcgaacgctttgaccagctgggtctgtccccttttcttttgcaggccctg
gaaaccctgggctacgagaccccatcgccgatccaggcggcctgcattccgcagttgctg
gccggccatgacatcctgggcgaggcccagaccggcaccggcaagacggcggccttcgcg
ctgccgctcctggagcggctcgacctgaccgagcggcggccccaggcgctgatcctgacg
cccacccgggaactggcgatccaggtggccgaggccctgcagagctatgcccacttcatg
cccggtttccacgtgctgccgatctacggcggccagagcatggtggtgcagttgcgcgcc
ctggaccggggcgcccatgtgatcgtcggcaccccgggccgggtgatggaccatctggag
cgcaagagcctcaacctggagggactcaagaccctggtgctggacgaggccgacgagatg
ctgcggatgggcttcatcgacgacgtcgagtggattctcgaacatacccccgccagtcgc
cagaccgcgctgttctcggccaccatgcccgaggtgatccgccgcgtggcgcgcacccac
ctgcgcgagccgcaggagatcaagatcagggccgccaccgccaccgtcaccaccatccgc
cagcgctactggcaagccaccggcaacaagctggatgcgctgacccgcatcctcgaagtg
gaggaggatttcgacgccgcgatcatcttcgtccgcaccaagctcgccaccgtggaactg
gcggagaagctggaggcccggggttatgccgccgccgccctgagcggcgacctgcagcag
gcccagcgcgagcgggtgatcgagcagctgaagaacaagaccctggacatcgtagtggcc
accgacgtggcggcgcgcggcatcgacgtgccccgcgtcagccacgtgatcaactacgac
attccctacgacaccgaagcctacgtccaccgcatcggtcgcaccggccgcgccggccgc
gccggcaccgcgatcctgttcatcgccccgcgcgagaagcgcatgctgcgggtgatcgag
cgcgccacgcggcagccgatcgagccgatgcaactgcccagcatggaggacgtggccgac
cgccgcgtcgcccagttcaagcgccaggtggtggaggtgctgggggccgaggaattgggt
ttcttcgaggacgtggtgagccagatcgagcgcgagcagaacgtggatacggtggagatc
gccgccgccctggcctggctggtgcagaaggagcggcccttgcagatggctcccggccgt
gccgccgatgccgaggcgcgcgtcggcgagagccgtccgccacgcgaggagcgcccggct
ttccgcgaggaacgttccgcctatcgggaagagcgtcccgcggttcgcgccgaacggcct
gcctttggcgaagagcgggctttccccgtccgcgaggagcgcccggccttcggcgaacgt
ccggcgcgccatgagcgtcctgcgcgtcccgccgccggcgggctgatgcgctaccgcatc
gaggtgggccgcgaccatggcgtcacgcccaagaacatcgtcggcgcgatcgccaacgag
gccggcatcgagagccgctacatcggccagatcaacctgttcgacagcttcagcaccgtg
gaattgcccgactccctgtcggcggaactcctcggcctgctgcggcgggtacgggtgcag
ggccggcagttggagatcgcgccggatcatggcgaccagcccaccagccgttcgccgcgc
ggcccccgtggcggcgaggagcggggagggcggccgttctcctcttctttccacaagagt
ggcgggcacgagccggcccggcgcgagggcggcttcggcaagccgccgcggagcgggggc
ttcgatcagccacgccgggaggcgggcttcggcaaacccttcaaggagggtggtttcggc
aagtctttcaaggaaggcgggcatggcaagcccttcaaggacggtggtcacggcaagcct
ttcaaggaaggcggccacggcaaacccttcaaggaaggcggtttcgccaagcctaagcgc
gaagccggtttcgacacgccgcgcaaacccggcgtggttcataagggcaaacgccacagc
tga
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