Denitratisoma sp. DHT3: B9N43_07390
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Entry
B9N43_07390 CDS
T10559
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
deni Denitratisoma sp. DHT3
Pathway
deni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9N43_07390 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deni03019
]
B9N43_07390 (rnr)
03016 Transfer RNA biogenesis [BR:
deni03016
]
B9N43_07390 (rnr)
Enzymes [BR:
deni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B9N43_07390 (rnr)
Messenger RNA biogenesis [BR:
deni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B9N43_07390 (rnr)
Transfer RNA biogenesis [BR:
deni03016
]
Prokaryotic type
tRNA degradation factors
B9N43_07390 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QDX82885
LinkDB
All DBs
Position
complement(1617583..1619772)
Genome browser
AA seq
729 aa
AA seq
DB search
MGKYDYPLPSREYILQLLGEQAGVPMPFEDLCDRLDVKPFEVTDFQRRLGAMARDGQLMQ
NRRGDWLIPDKADLIGGRVQGHRDGYGFLIPDDKEKGGDIFLSAKEMAKVLHGDRAIVRL
VGVDRRGRPEGKIVEVTDRANTRVVGRVINEHGVCFVAAENRRISQDILLPPPPKSDKKA
LRPKAGQVVMVEIIEQPTVRSQPIGRVIEILGNYADPGMEIEIALRKHDLPFEFSKEALK
QTKKLPDEVRKSDWKGREDLTGLPLVTIDGETARDFDDAVYCERQGKGFRLVVAIADVSH
YVDASSVLDQEAYDRGNSVYFPRRVISMLPEKLSNGLCSLNPQVERLCMVCDMSLSAAGA
IKRYRFYPAVMFSHARLTYTEVAAALYDQDPAARRKLEPLLPNLEALDAVFRLLAKAREK
RGAIDFDTVETRMIFDDNGKIARIEPYARNDAHRLIEECMLAANVCASEFLHEQEHATLY
RIHEGPPEEKLTKLREFLATFGMQLGGGDSPGAKDYARLLTKIEGRTDKVLLQTVMLRSL
SQAIYSPDNVGHFGLAYESYTHFTSPIRRYPDLLVHRAIKAALAGEKYRPGNWEEIGLHC
SATERRADEATRDVESWLKCFYMKDRIGEEYSGSISAVVPFGIFVALDEVFVEGLVHVSE
LGRDYFHFDEAAHAMVGERSGARYRLSDRVRVQVVRVDMEQNKIDFRLVEAPPATQPETG
AKPKGRRRG
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtacgactatcccttgccgagccgggagtacatcctgcagttgctgggcgag
caggcgggggtgccgatgcccttcgaggacctctgtgatcgactggatgtgaagccgttc
gaggtgacggatttccagcgccgcctcggcgcgatggcccgcgacgggcagttgatgcag
aaccgccgcggcgactggttgatccccgacaaggcggatctgatcggcggacgcgtgcag
gggcatcgggatggctacggtttcctgatcccggacgacaaggaaaagggcggcgacatc
tttctttcggccaaggaaatggccaaggtgctccacggcgaccgcgccatcgtgcgcctg
gtgggtgtcgaccgccgcggccggcccgaaggcaagatcgtcgaggtgaccgaccgggcc
aacacccgggtggtgggccgggtgatcaacgagcacggcgtctgcttcgtggcggccgag
aaccgccgcatcagccaggacatcctgctgccgccgccgccgaaaagcgacaagaaggcg
ctgcgccccaaggcggggcaggtggtgatggtggagatcatcgaacagcccacggtccgt
tcccagcccatcggccgggtgatcgaaatcctcggcaactacgccgatccggggatggag
atcgagatcgccctgcgcaagcacgacctgcctttcgagttctccaaggaggcgctgaag
cagaccaagaagctgcccgacgaggtgcgcaagtccgactggaaggggcgcgaggacctg
accggcctgccgttggtcaccatcgacggcgagacggcgcgcgatttcgacgatgccgtg
tattgcgagcgccagggcaagggcttccgcctggtggtggcgatcgccgatgtctcccat
tacgtggacgccagttcggtgctggaccaggaggcctacgaccggggcaactcggtgtat
ttcccgcggcgggtgatctcgatgctgccggaaaagctctccaacggcctgtgttcgctg
aatccccaggtggagcggctgtgcatggtctgcgacatgtcgctttccgccgccggcgcg
atcaagcgctatcgtttctatccggcggtgatgttctcccacgcgcggctcacctacacc
gaggtggcggccgcactttatgatcaggaccccgcggcgcggcgcaagctggaaccgctg
ctgccgaacctggaggcgctcgacgccgtcttccggctgctcgccaaggcgcgcgagaaa
cgcggcgccatcgatttcgacaccgtcgagacgcggatgatcttcgacgacaacggcaag
atcgcccgcatcgaaccctatgcccgcaacgacgcccaccgcctgatcgaggaatgcatg
ctggccgccaacgtctgcgcctcggaattcctgcatgagcaggaacatgccacgctctac
cggatccacgaagggccgccggaggaaaagctcaccaagctgcgcgaattcctcgccacc
ttcggcatgcagctgggcggcggcgacagtcccggcgccaaggactacgccaggctgctg
acgaagatcgagggacggaccgacaaggtgctgctccagacggtgatgctgcgctccctc
agtcaggccatctacagcccggacaacgtcggccacttcggcctggcctacgagagctac
acccacttcacctcgccgatccgccgctatccggatctgctggtgcatcgggcgatcaag
gcggcgctggccggagagaagtaccgcccgggcaactgggaggagatcggcctgcactgc
tcggccaccgagcgccgcgccgacgaggccacccgcgacgtcgagtcctggctcaagtgc
ttctacatgaaggaccgcatcggcgaggaatacagcggcagcatttccgcggtggtgccg
ttcggcattttcgtcgccctggacgaggtcttcgtcgagggcctggtgcatgtctccgaa
ctgggacgggactatttccacttcgacgaggccgcccacgccatggtcggcgagcgcagc
ggcgcgcgctaccggctctccgaccgggtgcgggtccaggtggtgcgagtggacatggaa
cagaacaagattgatttcaggcttgtggaggcgccgccggcgacgcagccggaaaccgga
gcgaaaccgaaaggacgccggcgtggctga
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