Denitratisoma sp. DHT3: B9N43_08390
Help
Entry
B9N43_08390 CDS
T10559
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
deni Denitratisoma sp. DHT3
Pathway
deni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9N43_08390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deni03019
]
B9N43_08390
Enzymes [BR:
deni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B9N43_08390
Messenger RNA biogenesis [BR:
deni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B9N43_08390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QDX81256
LinkDB
All DBs
Position
1817163..1818578
Genome browser
AA seq
471 aa
AA seq
DB search
MKFEDLGLSPELLRAVHEAGYSTPTPIQAQAIPIVLQGLDVMGGAQTGTGKTAGFTLPLL
QRLARHATTSPSPARHPVRALILAPTRELAMQVHDSVKTYSKYVPLRSVCIYGGVDIKPQ
IAELREGREIIVATPGRLLDHVEQKSVSFAQVEVLVLDEADRMLDMGFIPDIKRILALLP
KTRQSLLFSATFSDEIKKLADAMLKNPQLIEVARRNAVNETITHRVHLVNSDHKRHLLLH
LLQASNLSQVLVFVGTKFGASRLASWLERQGVKAEAIHGDKSQQQRTEALEAFKSGTAQV
LVATDVAARGLDIDDLPHVINYELPHTAEDYVHRIGRTGRAGKKGDATSLVAPEEKPRLA
DIEKLIKFKIDQVAVPDFDLGAVRDHEERGRHGHLRERDSRGVHGPRTSTRLPSASARLP
AVAADGFDFSKPYTPKAAGADGESEKEAAPPRRPLRPVAALLGGMGSKKSQ
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaagacctcgggctgtcgcccgaactgctgcgtgccgtgcatgaggcaggc
tacagcacccccacgccgattcaggcccaggccattcccatcgtattgcaggggctggac
gtcatgggcggcgcccagaccggcaccggcaagaccgcgggcttcaccctgccgctgctg
caacgcctggcccgccatgccaccacctcgccctcgccggcccggcatccagtgcgggcg
ctgatcctggcgccgacccgggagctggcgatgcaggtgcacgacagcgtcaagacctac
agcaagtacgtgcccctgcgctcggtctgcatctacggcggcgtggacatcaagccgcag
atcgccgaactgcgcgagggtcgggagatcatcgtcgccacgccgggccggctgctcgac
cacgtcgagcagaagagcgtcagcttcgcccaggtcgaagtgctggtgctcgacgaggcc
gaccggatgctggacatgggcttcattccggacatcaagcgcatcctcgcgctgctgccg
aagacgcgccagagtctgctgttctcggccaccttctccgacgagatcaagaagctggcc
gacgcgatgctgaagaatccgcagctgatcgaggtcgcccggcgcaacgcggtgaatgaa
accatcacccatcgggtgcacctggtgaacagcgatcacaagcgccatctgctgctgcat
ctgctgcaggcgtcgaacctgtcgcaggtgctggtcttcgtcggcaccaagttcggcgcc
agccgtctcgccagctggctggaacgccagggcgtgaaggccgaggccatccatggcgac
aagagccagcagcagcgcaccgaggccctcgaggccttcaagagcggcaccgcccaggtg
ctggtggccaccgacgtggcggcgcggggcctggacatcgacgacctgccccacgtgatc
aattacgaactgccccataccgccgaggattatgtgcaccgcatcggccgcaccggccgg
gcgggcaagaagggcgacgccacttcgctggtggcgccggaggaaaaaccccgcctggcg
gacatcgagaaactgatcaagttcaagatcgatcaggtggcggtgcccgatttcgatctc
ggcgccgtccgtgaccacgaggaacgcggccgccacggccacttgcgggagcgggacagc
cgcggcgtccatggcccacgcacctcgacccgcctgccgtcggccagcgcccgcctcccg
gccgttgccgccgacggcttcgacttcagcaagccctatacgccgaaggcggcgggagcg
gacggcgagtccgagaaagaggccgcccccccgcgccggccgctgcggccggtggccgcc
ctgttgggcggcatgggcagcaagaagtcgcagtag
DBGET
integrated database retrieval system
