Desulfobulbus oralis: CAY53_01575
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Entry
CAY53_01575 CDS
T05339
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
deo
Desulfobulbus oralis
Brite
KEGG Orthology (KO) [BR:
deo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
deo03016
]
CAY53_01575
Enzymes [BR:
deo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CAY53_01575
Transfer RNA biogenesis [BR:
deo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CAY53_01575
Prokaryotic type
tRNA splicing ligases
CAY53_01575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AVD70340
UniProt:
A0A2L1GKY7
LinkDB
All DBs
Position
complement(391361..392806)
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AA seq
481 aa
AA seq
DB search
MLNAQDLQALGLPRDKRVLPLAMKAVHVALSHGADEGAMRAAIRRLCLDPAGMTADPVLG
EVAEVLAALWPDGRGAAYTPRDSPAPWQQWGQVHVEAEAIQQMKNACALPVAVRGALMPD
AHAGYGLPIGGVLAVRSAVIPFAVGVDIACRMRLSVLDWPVASLQTRREALVEALETETS
FGVGAGFTGAARRQHAVMDEDWGMLEPTGVQKDKAWKQLGSSGGGNHFAEFGELQLGEAA
TIGGVHLEPGRYLALLSHSGSRGAGEAVATHYSQLAVRLHPSLPENLRHLAWLDLAGEPG
QAYWAAMELMGRYASANHELIHRHILAHLGAAELTHVENHHNFAWKEEHSGEQVIVHRKG
ATPAGAGVQGVVPGSMGTPGFVIQGRGNEAALSSCSHGAGRLMSRTAAFRCIRPEEVARY
LREHGVELLSGGLDEAPQAYKDINAVMAGQADLVDILARFVPRLVKMAPGSGARRFGKRR
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatgctcaggatttgcaggccttgggcctgcccagggacaaacgggttctgccg
ctggcgatgaaggcggtacatgtggcgctctctcacggtgcggacgagggggcaatgcgg
gcggccatccggcggctgtgcctcgatccggccggcatgacggccgatccggtcctgggc
gaggtggcggaggtcctggcggcgctctggcccgacggcaggggcgcggcctatacgccc
cgcgacagccccgcaccctggcagcagtggggtcaggtgcatgtggaggcagaggccatc
cagcagatgaaaaacgcctgcgccctgccggttgcggtgcgcggggcactcatgccggac
gcccacgccggctacggcctgccgattggcggggtgcttgcggtacgcagcgcggtcatc
ccctttgccgtgggtgtggacattgcctgccggatgcggctgagcgttttggattggccg
gttgccagcctgcaaacccggcgcgaggcgctggtggaggcgctggagaccgagaccagt
tttggcgtgggcgcgggttttaccggcgcagcgcggcggcagcacgcggtcatggacgag
gattggggcatgctcgagcccacgggcgtgcagaaagacaaggcctggaaacagcttggt
tccagcggtggcggcaatcattttgcggaatttggcgaattgcagcttggtgaggcagcc
accatcggcggcgtgcacctggagcccggacgctatctggcgctcctgagccattccggc
agccggggcgcgggcgaggcggtggcgacgcattacagccagcttgccgtgcgtctgcat
ccgtccctgccggaaaacctgcgccatctggcctggctggatttggcgggcgagcccggg
caggcgtattgggccgcaatggagctgatgggccgctatgcctcggccaatcacgagctg
attcaccgccacattttggcgcatctgggcgcagcggagctgacccacgtggaaaaccac
cacaatttcgcctggaaagaggaacacagcggcgaacaggtgattgtgcaccgcaagggc
gcgacacctgcgggtgcgggcgtgcagggcgtggtgcccggctccatgggcacgcccggc
tttgtgatccagggccggggcaacgaggccgcgctttcctcctgttcccacggtgcgggc
cgcctgatgagccgcactgccgcattcaggtgcatccggccggaagaggtggctcgctac
ctgcgcgagcacggcgtggaactgctctccggcggcctggacgaggccccgcaggcgtac
aaggacatcaatgcggtcatggccggacaggcggatttggtggacattctggcccgcttt
gtgccccgcctggtgaaaatggcccctggcagcggggcgcggcgctttgggaaaaggcgc
cggtag
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