Desulfobulbus oralis: CAY53_06740
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Entry
CAY53_06740 CDS
T05339
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
deo
Desulfobulbus oralis
Pathway
deo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAY53_06740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deo03019
]
CAY53_06740
03009 Ribosome biogenesis [BR:
deo03009
]
CAY53_06740
Enzymes [BR:
deo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CAY53_06740
Messenger RNA biogenesis [BR:
deo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAY53_06740
Ribosome biogenesis [BR:
deo03009
]
Prokaryotic type
rRNA processing factors
CAY53_06740
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RAB3A-like_C
Motif
Other DBs
NCBI-ProteinID:
AVD71211
UniProt:
A0A2L1GNE4
LinkDB
All DBs
Position
1534213..1536324
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AA seq
703 aa
AA seq
DB search
MAERKTRARRSGAKTGSQASTGAWWKSTEPEEEMPASEAGQKSSDQTGPGQGGQEEAGKT
PRRPAGRRKKKAAAADSDSGASVAAGGEPAQAVPPAPLSAEAPETVGGSGAGLEAESAEV
ADVAAEPPPPEPKEAAVRASRKPRHGHRRGKKTETPAPESGAGGAVPDTVLVAEAPAPEV
PASEEASSEPSAVSHDPEAVYKLLVNAEEPEECRVALLENGRLESFHVSNVEREATRNNI
YKGRIVSIEANLQVAFVDIGTGRNAFLPFSEIHPEYYRENLSDRVRELVNQQQWKKLKIE
EVMQKGQEVLVQVVKEVTGNKGASVTTYLSLPGRCLVLLPGSDSAGISRKITGEERRGAL
REMMGELELPEGIGYIVRTASVDINQSNLKEDLDRLLSLWEQIRGRGQTVESPALIYQEQ
DTVVRFLRDHFFPEIQEIVVDTEATLQQVRDFIQQLPAEQRRVRVRQHKGVKPIFNQHNI
EEQIESIYRPQVPLPSGGSIVIDPTEALVAIDVNSGRTSKNSDFEDSIFQANMEAAEELA
RQLRLRDLGGLIVVDFIDMRNKKHIQEVERQVKASMKRDKAKVDVSRISRFGLMQISRQK
MGAPTAKGSYIVCPHCQGRGVVRSVETLALFYLRRIQTGIIRKKVARVECRFPLEVAQYL
LNRKKEELVALERQHNAAIDIIVRPDMRPMENEMEFLGAKNVV
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaggaaaacaagggcccgcaggagtggagcgaaaacaggctcgcaggcgagt
acgggcgcgtggtggaagagcacggagcccgaggaagaaatgccggcctcagaggctggt
caaaaatcctcggatcagaccgggcctggacagggtggccaggaggaggccgggaaaacg
cctcgccgccccgccggacgccggaaaaaaaaggcagccgctgccgactccgactcagga
gcatcagtcgcggctgggggggagccggcgcaggccgttccgcccgcccccctgtccgca
gaagcgccggaaactgtgggcggcagtggcgccgggctcgaggcggagagcgccgaagtg
gcggatgtcgctgcagagcctcctccgcccgagcccaaggaggcggcggtgcgggcctcc
aggaagccccgccatgggcacaggcggggcaaaaagaccgaaacccctgctcccgaatcc
ggggctggcggagcagttccggacactgtcctggtggccgaagccccggcgccggaagtc
cccgcttcagaagaggcgtcttccgagccatcggccgtcagccatgaccccgaggccgtg
tacaagcttctggtcaacgccgaggaacccgaggagtgccgggtggcgctgctggaaaac
ggccgtttggaatccttccacgtttccaacgtcgaacgcgaagccaccagaaacaacatt
tacaagggccgcatcgtttccatcgaggccaatctgcaggtcgcctttgtggacatcggc
actggccgcaacgcctttttgcctttcagcgaaatccatccggaatactaccgcgagaat
ttgagcgaccgcgtgcgcgagctggtgaaccagcagcagtggaaaaagctcaagatcgaa
gaggtcatgcaaaagggccaggaagtgctggtgcaggtcgtgaaggaggtgaccggcaac
aagggggcgagcgtcaccacctatctgtccctgccgggtcgctgcctggtgttgttgcct
ggcagtgacagtgcgggcatttcccgcaagatcacaggcgaagagcgccgcggtgcattg
cgggaaatgatgggcgagctggagctgcccgaaggcatcggctacatcgtgcgcaccgcc
agtgtggacatcaaccagagcaatttgaaagaggatctggaccgcctgctcagcctgtgg
gagcagattcgtggccggggccagaccgtcgagtcgccggccctcatctatcaggagcag
gacacggtagtgcgttttttgcgggaccatttttttccggagattcaggaaattgtggtg
gacaccgaagcaacgctccagcaggtgcgggacttcatccagcaactgccggcagagcag
cgcagagtgcgggtacggcagcacaagggcgtaaagcccatcttcaaccagcacaacatc
gaagagcagatcgagtccatttaccggccccaggttccgctgccctccggcggctccatt
gtcatcgatccgaccgaggcgctggtggccattgacgtcaactcgggccgcacctccaag
aacagcgactttgaagacagcatctttcaggccaatatggaggcggcggaagaactggcc
cgccagctccggctgcgcgacctgggcggactcattgtggtggatttcatcgacatgcgc
aacaagaagcacatccaggaagtggagcgccaggtcaaggcgagcatgaagcgcgacaag
gccaaggtggatgtcagccgcatttcccgctttggtctgatgcagatttcccgccagaag
atgggcgcccccacggccaagggcagctatatcgtctgcccccactgtcagggccggggc
gtggtgcgctcggtggaaacgctggcgctcttctatctgcgtcgcatccagaccggcatc
atcaggaagaaggtcgcccgggtggaatgccgctttccgctggaggtggcgcagtacctg
ttgaaccggaaaaaggaggagctggtggccctggagcggcagcacaatgcggccattgac
attatcgtgcgacccgacatgcgacccatggaaaacgagatggaatttttgggcgcgaaa
aacgtggtctga
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