Desulfuromonas sp. AOP6: AOP6_0395
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Entry
AOP6_0395 CDS
T08366
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dep
Desulfuromonas sp. AOP6
Pathway
dep02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dep00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AOP6_0395 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dep03021
]
AOP6_0395 (rpoD)
Transcription machinery [BR:
dep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AOP6_0395 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
HTH_20
VBS_C3G9
kleA_kleC
Exonuc_VII_S
Motif
Other DBs
NCBI-ProteinID:
BCA78608
LinkDB
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Position
406338..408095
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AA seq
585 aa
AA seq
DB search
MAKKNAMEEVQNLIDLGKEKGFLTYDEVNDSLPADLISSDQLEDVMSMFGEMDIAVVDSD
KKVSLSDERGIDEEGGDDEEEEESEFEAGVLGRTSDPVRMYLREMGQVSLLTREGEVEIA
KRIEEGEALVTSVIMKTPIAFKEIIGLGDRLAKGQISVAEITKDYEEEEGSEEEEKNRLR
ILALVDQIRELDTHFMAARERLAGEVPKDEKKTLEKQTRELKTQISELMRQIRLKDFQVA
KIVDTLKELAEQVKKGMTEVRACEDELKLPHKDIKRLLRRMRKSDEEALKVSEELKTPID
SLLVVEKRLKSAQRKFKRVQEESGFAPEELLESLKELQKGEWRAKIAKTELVEANLRLVV
SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQAR
TIRIPVHMIETINKLIRTSRQLVQEMGREPTPEEIAERMDLPLEKVRRVLKIAKEPISLE
TPIGEEEDSSLGDFIEDKGVVSPLEAVIKGNLSDQTSRVLSTLTPREEKVLRMRFGIGEK
SDHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRSKRLKSFVEF
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaaaaacgcaatggaagaagttcagaacctgatcgacctgggcaaggaaaag
ggctttctcacctatgacgaggtgaacgattccctacctgccgatctcatctcttccgat
cagctggaagatgtcatgagcatgttcggtgagatggatattgccgtggtcgattccgac
aaaaaggtgtccctttccgacgagcggggtatcgacgaggagggcggcgacgacgaagag
gaagaggagtccgagttcgaggccggcgtcctcggccgcaccagcgaccccgtccgcatg
tacctgcgcgagatgggccaggtctctctgctgacccgcgaaggggaggtcgagatcgcc
aagcgcatcgaagagggggaagccctggtgaccagtgtcatcatgaagacccctatcgct
ttcaaggagatcatcggattgggagatcgtctggccaagggccagatcagcgtcgccgag
atcaccaaggattacgaggaggaagaggggagcgaggaggaagaaaagaatcgcctgcgt
atcctcgccctggtcgaccagatccgcgagctggacacccattttatggctgcccgcgaa
cgcctcgccggggaggtgcccaaggatgagaaaaagacgctggagaagcagaccagggaa
ctcaagacccagatctccgagctgatgcgccagatccgcctcaaggatttccaggtagcc
aagattgttgacaccctcaaggaactggcggagcaggtcaagaaagggatgaccgaggtc
agagcctgcgaggatgaactgaagctgccccacaaggacatcaagcggctgctgcggcgc
atgcgcaagagcgacgaggaagccctcaaggtctccgaagagctcaaaacccccatcgac
agtctgctggtggtggaaaagcgcctcaagagtgcccagcgtaagttcaagcgggtgcag
gaagaatcaggctttgcgccggaagaactgctggagtccctgaaagagctgcagaagggg
gaatggcgggccaagatcgccaagacggaactggtggaagccaacctgcgcctggtcgtc
tccatcgccaagaagtacaccaaccgtggtctgcagttcctcgacctcattcaggagggg
aatattggcctcatgaaggcggtggacaagtttgaatatcagcgcggctataagttctcc
acttatgccacctggtggatccgccaggccatcacccgggccatcgctgaccaggctcgc
accatccgtatcccggttcatatgatcgagaccatcaacaagctgatccgcaccagccgg
cagctcgtgcaggagatggggcgcgagccgacgccggaggagattgccgagcgtatggat
ttgccgctggagaaggttcgccgcgttctgaaaatcgccaaggaacccatttccctggag
acccccatcggcgaggaggaagattcttccctgggcgatttcatcgaggacaagggggtt
gtctcccccctcgaagcggttatcaaggggaacctttccgaccagacctcccgcgttctt
tccaccctgactccgcgagaggagaaggtcctgcgcatgcgcttcggcatcggcgaaaaa
tcggatcacaccctggaagaggtggggcaggattttgccgttacccgtgagcgtatccgt
cagatcgaagccaaagctctgcgcaagctccgccatcccagccgctccaagcgcctgaag
agttttgtggagttttag
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