Desulfuromonas sp. AOP6: AOP6_0589
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Entry
AOP6_0589 CDS
T08366
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dep
Desulfuromonas sp. AOP6
Pathway
dep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOP6_0589 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dep03019
]
AOP6_0589 (rnj)
Messenger RNA biogenesis [BR:
dep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOP6_0589 (rnj)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
BCA78802
LinkDB
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Position
complement(618313..619995)
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AA seq
560 aa
AA seq
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MSLHAPLHPDALRLLPLGGLGEIGLNMMAVECRGDILLIDCGLMFPEAYMMGIDLVIPDV
TPLLERVKDIRGLVLTHGHEDHIGAIPFLLDTLGNPPIFGTPLTLGLLQNKLDEHHLLEK
ASLNPIEPGVAFTLGCFGIEPFRVAHSIVDGVGFAIRTPAGLVVHTGDFKLDLTPVDSQP
TDLARLAAYGKEGVLLLLADSTNVEKEGYTLSERTVGEALQEIVPRCPGKVLVSTFSSNI
HRIQQVADAAVAAGRQILVIGRSMVANIAIARQLGYLQMPDDILVDVGQARHLPADKLLI
IATGSQGEPRSALSRIALDDHKQIKLEQGDTVILSSKFIPGNEKAISEVINHLYRRGAEV
FYESTSEIHVSGHASREELKLVHSLIRPRYFVPVHGEYRHLVKHAQLAQSMGMAPSNTLV
LENGTPLVLSRNGVTLEGKVETGRVFIDGKGVGDVGTMELRDRSHLANHGLVVVLLALNQ
ASGRVIYGPELFSRGFVPEEESRPYLDEAAQAVSAMLAEHSLAAMTDWEELRVEVRKTLR
RFFNKTIDRRPLILPVILEL
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgagtctccacgcccctctgcatcccgatgccctgcgcctgctccctttgggcggactc
ggcgaaatcggtctgaacatgatggccgtcgaatgccgcggcgacatcctcctcatcgac
tgcggcctgatgttcccggaagcctacatgatggggatcgacctggtcatccccgacgtc
acccccttgctggaacgggtgaaggacatccgcgggctggtgctgacccacggccacgag
gatcacatcggcgccattccctttctgctcgacaccctgggcaatccaccgatcttcggg
acacccctcaccctcgggctgctgcagaacaagcttgacgaacaccatctgctcgaaaag
gcgagcctgaaccccatcgaacccggcgtggcattcaccctgggatgtttcggcatcgag
cccttccgggttgcccactccatcgtcgatggcgtcggctttgccattcgcaccccggcc
ggcctcgtcgttcatacgggcgacttcaagctggatctgacccccgtcgacagccagccc
accgacctggcccgcctggcggcttacggaaaagaaggcgtcctgctgctgctggccgac
tccaccaacgtagaaaaagagggttataccctgtcggaacgcaccgtgggcgaggccctg
caggagatcgtgccgcgctgtccgggcaaggtactggtctccaccttttcctccaacatc
caccgcatccagcaggtggccgacgccgctgtagccgcggggcgccagattctggtcatc
ggccgcagcatggtggccaacatcgccatcgcccgccagctcggctatctgcaaatgcct
gacgacatcctcgtcgacgtcggccaggcccgccatctgccggcggacaagctgctcatc
atcgccaccggcagccaaggggagcctcgcagcgcgctctcacgcatcgccctggatgac
cacaaacagatcaagctggagcagggcgacacggttatcctctcctccaagttcatcccc
ggcaacgagaaggccatcagcgaagtgatcaaccatctttaccggcgcggtgccgaggtc
ttctatgaaagcaccagcgagatccacgtctctggtcacgccagccgggaagaacttaaa
ctggtgcactccctgattcggccgcgctatttcgtgcctgtccatggcgaatatcgtcac
ctggtcaaacatgcccagctcgcccagtccatgggcatggctccgtcgaatactctggtg
ctggagaacggtacccccctggtcctctcccgcaacggcgtcaccctggaagggaaggtg
gaaacgggacgggttttcatcgacggcaaaggggttggcgacgtcggcaccatggaactg
cgcgaccgcagccatctggccaaccatggcctggtggtggttctcctggccctcaaccag
gccagcggccgcgtcatctacggcccagagctcttcagccgcggcttcgtgccggaagag
gagagccgtccctatctggacgaggccgcgcaggccgtcagcgccatgctggcagaacac
agcctggccgccatgaccgactgggaggaactgcgggtggaagtgcgcaagaccctgcgc
cgttttttcaacaagaccatcgaccgccgacctcttattttgcctgtcatcctcgaactc
tga
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