Desulfuromonas sp. AOP6: AOP6_1550
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Entry
AOP6_1550 CDS
T08366
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dep
Desulfuromonas sp. AOP6
Pathway
dep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOP6_1550 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dep03019
]
AOP6_1550 (deaD)
03009 Ribosome biogenesis [BR:
dep03009
]
AOP6_1550 (deaD)
Enzymes [BR:
dep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOP6_1550 (deaD)
Messenger RNA biogenesis [BR:
dep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOP6_1550 (deaD)
Ribosome biogenesis [BR:
dep03009
]
Prokaryotic type
rRNA helicases
AOP6_1550 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BCA79763
LinkDB
All DBs
Position
complement(1674810..1676567)
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AA seq
585 aa
AA seq
DB search
MIENDVVSFTQLGLHPAVFKVIDEVGYETPSPIQAQSIPPLLEGRDLLGQAQTGTGKTAA
FSLPLLSRIDLSKKVPQILVLTPTRELALQVAEAMQTYARHLPGFQVLPVYGGQNMSQQL
RQLQRGVHAVVGTPGRIQDHLRRGTLKLDRLLAVVIDEADEMLKMGFIEEVEQILEHTPA
ERQTVLFSATIPKEVIQVARRHLKSPVEIRIKSKTSTVDTISQRFWQVKGLHKLDALTRI
LEAEEIEAMIIFVRTKIATVELSEKLEARGFSSAPLNGDMTQAMREKTIERLKNGSLDIV
VATDVAARGLDVKRISHVVNYDIPYDTEAYIHRIGRTGRAGREGKAILFVAPRERRMLNA
IEQATRQPITPMSLPTRKDITDRRIGLFKEMIAEAMESQDLEFFEELIDTYQDEYDVGLR
RIASTLAYLVQKDKPLQIEGGGTEDVMDTPSAAPASGSRKVKTTTAAMSRYRIEVGRIHG
VEPRHIVGAISNEAQLSASDIGQIKLFDTFSLVELPAVLPKETMRLLQNVWVCGQQLQLR
VDTGKPETGTGEGRRKKPPIKGKGTRPPKPTGKKTPAGRRGPKDD
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaaatgacgttgtcagttttacccagcttggccttcaccccgcagtctttaaa
gttattgacgaggtcggatatgagactccgtcacctattcaggctcagagcattcctccc
ttgctggagggcagggacctgctcggtcaggcgcagacgggcacaggcaaaaccgcagct
ttttctcttcccctcttgagccgtattgatttgtcgaaaaaggttccccagattctggtc
ctgacgccgacacgagaactcgcactgcaggtggctgaggcgatgcagacctatgcccgt
catctgcctggattccaggttttgccggtgtatggcggccagaatatgagccagcaactt
cggcagttgcaacgaggggtccacgcggtggtgggtacgccaggacgcatacaggatcac
ctgcgacgcggcaccctcaagcttgatcgcctgctggccgtggttatcgacgaagcggat
gaaatgcttaagatgggttttatcgaggaagttgagcagatactcgaacacaccccggca
gagcggcagaccgttctcttttccgccaccatcccgaaagaagtaattcaagtggcccgc
cggcacctgaagagtcccgtcgagatccgcattaaaagcaagacctcgacggtagatacc
atcagccagcgcttctggcaggtcaagggcttgcacaaactggacgctctcacccgtatt
cttgaagcggaagagatcgaagcgatgatcatcttcgttcgcactaaaattgccacagtt
gaattgtctgagaagctcgaagcacgcggattctcaagtgcccctctcaatggcgacatg
acacaggccatgcgtgagaagaccatagagcgtctcaagaacggttctctcgacatcgtc
gtggcgactgatgtggcagcccgcgggctggatgtaaagcgcatcagtcatgtggtcaac
tacgatatcccttatgataccgaagcgtatatccatcgcattggccgcacgggtagggca
gggagggagggcaaagccattttatttgtggccccccgcgagcgccgcatgctcaatgcg
attgaacaggccacacgccagccgatcactcccatgtccctgccaacccgtaaggatatt
acagacagacgtattggtcttttcaaagagatgatcgccgaggcgatggagtctcaggac
cttgaattctttgaagaattgatcgatacctatcaggatgaatatgatgttggattgaga
cggatcgcctcgaccctggcctacctggttcagaaggacaagccgctgcagatcgaaggt
gggggcacagaggatgtcatggacactccttccgcggcacctgccagcggcagccgaaag
gtcaaaacaacgacagctgccatgtcgcgttatcggattgaagtcggacgcatacacggt
gtggagccgcgccatattgtcggcgctatcagcaacgaggcacaactcagcgctagcgat
atcggtcagatcaaattgttcgataccttcagcctggttgagttgcctgccgttctccca
aaagaaaccatgcgtctgttgcagaatgtctgggtttgtggacagcagttgcagcttcgt
gtcgatacgggtaagcccgaaacgggcacaggggaaggccgccgaaaaaaacctccgatt
aaggggaaggggacacgtccacctaaaccgaccgggaaaaaaacacctgccggtcgccgg
ggtccaaaagacgattag
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