KEGG   Desulfuromonas sp. AOP6: AOP6_1833
Entry
AOP6_1833         CDS       T08366                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
dep  Desulfuromonas sp. AOP6
Pathway
dep02024  Quorum sensing
dep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AOP6_1833 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AOP6_1833 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dep03019]
    AOP6_1833 (hfq)
   03036 Chromosome and associated proteins [BR:dep03036]
    AOP6_1833 (hfq)
Messenger RNA biogenesis [BR:dep03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AOP6_1833 (hfq)
Chromosome and associated proteins [BR:dep03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AOP6_1833 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: BCA80046
LinkDB
Position
complement(1976807..1977040)
AA seq 77 aa
MAKTPFNIQDQYLNQARKERVKVIVMMMSGEKLTGYIKSFDSFCLLVESSGDILLYKHAI
SSITSADGAFRLHGGKD
NT seq 234 nt   +upstreamnt  +downstreamnt
atggccaagaccccgttcaatatccaggatcagtacctcaaccaggcccgcaaggagcgg
gtcaaggtaatcgtgatgatgatgtccggcgaaaaactgaccgggtatatcaagtctttc
gacagcttctgtctgcttgttgaaagcagcggtgatattctgctctacaagcatgccatc
agttcgatcacctcagctgacggtgccttccgtctccatgggggcaaggactag

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