Desulfuromonas sp. AOP6: AOP6_2010
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Entry
AOP6_2010 CDS
T08366
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dep
Desulfuromonas sp. AOP6
Pathway
dep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOP6_2010 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dep03019
]
AOP6_2010 (rnr)
03016 Transfer RNA biogenesis [BR:
dep03016
]
AOP6_2010 (rnr)
Enzymes [BR:
dep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AOP6_2010 (rnr)
Messenger RNA biogenesis [BR:
dep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOP6_2010 (rnr)
Transfer RNA biogenesis [BR:
dep03016
]
Prokaryotic type
tRNA degradation factors
AOP6_2010 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
Dimerisation
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
BCA80223
LinkDB
All DBs
Position
complement(2167429..2169624)
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AA seq
731 aa
AA seq
DB search
MPVKSNDIVKFIESRPGRPLSAREIAEGLRISPSQRKKFYRLLESMAADGQVARLKGDRY
ALPRQPTLVTGTVSVHRDGYGFVSPRDGQGPDVFVPARFLREIMHGDEVVVRVERGGRPG
KPEGRIVSVEKRAHSTLIGLYEPGRKFGSVHPADPRLNQPVFVPEGQELGAQAGQVVLVA
IDAYPNEFRNAEGHIVQVLGDPSDPAVEILSIIHKHGLPQEFPAEVLAEASLLPEDVQPG
DLEQRKDLRDLPFVTIDGETAKDFDDAVCLRREEGGTCRLWVAIADVGHYVKEGSVLDQE
AYLRGTSVYFPGQVIPMLPERLSNGICSLNPQVDRLTLVAEMVFDAKARRQDSCFYPAVI
RSRARLTYTEVHEMVEKQLAETIERYGELHPMLTEMLALSEDLTAMRRQRGSLDFDLPEA
EIILGVRGEPENIIKAERNKAHRLIEEFMLAANEAVAFFLGQRDIPLLYRVHEPPDIAKL
QAFQQFIAFFNYGLNLEAQGVDPRALQELLAQVEGKPEERTINQVLLRSMKQAFYSPENL
GHFGLAADHYCHFTSPIRRYPDLQVHRVLRQALQSGGLPESQKKGLADALPEMGEHTSRT
ERRAMEAEREIVELKKCQFMAERVGEQYAGYITGVQPFGLFVELKEFFVEGLVHLTTLSD
DFYTYEEDRHRLVGQYRRRIFQVGNEVEVQVKNVSVERREIDFVLVDLAVNPADSQEPPK
GRRPQRKSKKR
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcaaatccaacgatattgtcaaattcattgaaagcaggcccgggcgccccctc
tctgcccgggaaatcgccgagggtctgcgcatttctccttcccaaagaaaaaaattctac
cgccttcttgaaagcatggcggccgacggccaggtggcgcgtctcaaaggggatcgctat
gctctcccccgccagccgaccctggtgaccggtacggtttccgtgcaccgcgacggctac
ggttttgtctcgccacgggacggtcagggccctgatgtctttgtaccagcccgctttctg
cgcgaaatcatgcatggtgatgaggtcgtggttcgggtcgaaagagggggcaggccaggg
aaaccagagggacgcattgtcagtgtggagaaacgggcccacagcacccttatcggcctt
tatgagccgggacgcaagtttggctcggttcatcccgccgatccccggctgaatcagcct
gtttttgtgccagaaggccaggagcttggagcgcaagccggtcaggtcgtcctcgtggcc
atcgatgcctatcccaatgaatttcgcaacgccgaaggtcacatcgttcaggtgcttggt
gacccgtctgacccagccgtcgaaattctctccatcatccataaacacgggcttccccaa
gagtttccagccgaggttctggccgaggccagtctcctgccggaggatgtgcagcctggt
gatctggaacagcgtaaagacctgcgcgacctgcctttcgtgaccatcgatggtgaaacg
gcgaaggacttcgatgatgccgtctgtctccggagagaggagggcggcacctgtcgtctg
tgggtggcgattgccgacgtcggccactacgtgaaggaaggatcggttctcgaccaggaa
gcttatctgcggggaaccagcgtctacttccccgggcaggttatccccatgctccccgag
agactgagtaacggtatctgttctctcaacccccaggtggatcgcctgacgctcgtggcc
gagatggtctttgacgccaaggcccgccggcaggacagctgtttctacccggcggtcatc
cgcagccgggcgcggctgacctataccgaagtccatgagatggtggagaaacagctggcg
gaaaccatcgagcgctatggggaactccaccccatgctcacggaaatgctggcgctttcg
gaagatctgaccgccatgcgtcgccagcggggcagcctcgatttcgacctgcccgaggcg
gaaatcatccttggggtgcggggagagccggaaaacatcattaaggccgaacggaacaag
gcgcatcgtctgatcgaggagttcatgctcgctgccaatgaagcggtggctttttttctt
ggtcagcgggacatccctttgctctatcgggtacatgaacctcccgacatcgccaagctg
caggcgtttcaacaatttatcgccttcttcaactatgggctcaacctggaggcgcagggg
gtcgatccccgcgctctgcaggagctgctggcgcaggtcgagggcaaacccgaggaacgg
acgatcaaccaggtcctcctgcgcagtatgaaacaggctttctactcgccagagaacctc
ggccacttcggtctggcggcggaccattactgtcattttacgtcaccgattcggcgctat
cccgatctgcaggtccaccgggtgctgcgccaggctttgcagtccggtggcctgccggag
tcgcagaaaaaaggtctcgcggacgcgctccctgaaatgggggagcacacctcccggaca
gagcggcgagccatggaggcggaacgggaaattgtcgaactgaaaaaatgccagttcatg
gcggagcgggtaggggagcagtacgctggctatattaccggggtgcagccctttggcctc
tttgtcgaactgaaagaattttttgtggaaggactggttcatctcaccaccctcagcgac
gatttctatacctatgaagaggacaggcatcgcctggtcgggcagtatcgacgacgcatt
tttcaggtaggcaatgaagtcgaggtccaggtgaaaaatgtcagcgtggaaaggcgggaa
atcgatttcgtgctggtcgatctggccgtcaacccggctgattcgcaggagccaccgaaa
ggtcgacgccctcagagaaaatcgaaaaaacgatga
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