Desulfuromonas sp. AOP6: AOP6_2257
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Entry
AOP6_2257 CDS
T08366
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dep
Desulfuromonas sp. AOP6
Pathway
dep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOP6_2257 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dep03021
]
AOP6_2257 (rpoC)
03400 DNA repair and recombination proteins [BR:
dep03400
]
AOP6_2257 (rpoC)
Enzymes [BR:
dep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOP6_2257 (rpoC)
Transcription machinery [BR:
dep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOP6_2257 (rpoC)
DNA repair and recombination proteins [BR:
dep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOP6_2257 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
TyeA
Motif
Other DBs
NCBI-ProteinID:
BCA80470
LinkDB
All DBs
Position
complement(2427768..2431934)
Genome browser
AA seq
1388 aa
AA seq
DB search
MDDIFSFFERPKDPLNFNSIRLSLASPDKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLACPVAHIWFLKSL
PSRIATLLDLTLKEVERVLYFEAYVVLDKGDTTLAVGQILSEDKYRELMDEFAGQFTAAM
GAEAVREMLTTIELDELSQSLRVEMREAASEAKRKKVAKRLKVVEAFKVSGNRPEWMILE
AIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEVIIRNEKRMLQ
ESVDALFDNGRRGRAITGPNKRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYNKLEERGYCTTIKSAKKLVEKEKPEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQIEA
RVLMMSTNNILSPANGKPIIVPSQDMILGLYYMTRERAFVKGDSKSFFSPEEVRIAYDAG
EADLQAKIKVRMVTGEGREVALVDTTVGRVLLREIVPTSIPFEHINRTMTKKQVAELIDT
AFRLAGPKETVILADRLKDTGYRFSTIAGISICLDDMVIPAAKQEYIDKAVQEVTEIQNQ
YTEGLITDGERYNKVIDIWAKCTEDIAGIMLGNLSVDVLTDPESGEQVKIPSFNAIHMMA
DSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDAIITELDCGTLDGILVSSLTEGGEVIEPLGDRILGRSALE
DVLDPVTGDILVEANQEIDETLVTKIENSGIEKLKIRSVLTCQSRRGICATCYGRDLARG
HMVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRRAEQTSLEARFDGTLRYINLNTV
VDSAGFHVVMNRNGEVAVIDETGRERERYGVVYGAKLRVGPDGAIKAGGLIAEWDPYTMP
ILTEGSGRVHFGDVIEGVSMEEQLDDVTGLSRKVIIESKAADRRPRITLKDEDGKTVKLP
SGAAARYMLPVGANIVVTEDALVGAGDILAKIPRETTKTKDITGGLPRVAELFEARKPKE
FAVISEIDGVVSYGKDSKGKRKVIVTPEVGEPKEYLIPKGKHISVHEGDSVKAGEALMDG
SSNPHDILRVLGEKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRIKEVGDTR
FLLDDQVERWEFEQENLRVMGEEGQPAVGEPLMLGITKASLSTESFISAASFQETTKVLT
QAAIEGKVDFLRGLKENVIMGRLIPAGTGISKYRSAKLNIEEPQEVIEVYEDDIDEDIVE
ESEDVSVE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
ttggacgatattttcagcttttttgagcgaccgaaggatcccctcaatttcaactcgatc
cgcctttcgctggcttctccggacaagatccgcgagcggtcctttggtgaggtcaaaaaa
ccggaaaccattaactaccgcaccttcaagccggagcgcgacggtcttttctgcgccaaa
atcttcggcccgactaaggactatgagtgtaactgcggtaagtacaaacgcatgaaacat
cgcggcattgtctgcgagaaatgcggtgttgaggttattcccagcaaggtacgacgggag
cgtcttgggcacattgacctggcgtgtccggtggcccatatctggtttctcaagtcattg
ccttcacgtattgcaacactgcttgatcttaccctcaaagaggtagaacgcgtcctctat
tttgaagcctatgttgttctggacaagggtgatacgacccttgccgtcggtcagatactg
agcgaagacaagtatcgtgaactgatggatgagtttgccgggcagtttacggcggccatg
ggtgccgaagcggtcagggaaatgctgaccactattgaactcgacgaactgtcacagtct
ctgcgtgttgagatgcgcgaagcggccagcgaggccaagcggaaaaaggtcgccaagcgc
cttaaggtcgtggaggctttcaaggtgagcggcaatcgtcccgagtggatgattcttgaa
gctattcctgttcttccacctgagctgcgtcctttggtcccccttgatggggggcgcttc
gcaacgtcggaccttaatgatctttaccggagggtaatcaatcgtaataatcgccttaag
cgattgattgaactgcgggcccctgaggtcatcatccgcaatgaaaaaagaatgctgcag
gagtcggtagacgcccttttcgacaacgggcggcgcggacgcgccatcaccggtcccaat
aagcgtcccctgaagtctctttcagacatgctcaagggtaaggggggacgtttccgccaa
aacctgctgggtaaacgtgtcgattattctggtcgttctgttatcgttgttggcccggaa
ctcaaactccatcagtgtggtctgcccaagaagatggctctggagttgttcaagccgttc
atctataacaagctggaagagcggggctattgcaccaccatcaaaagtgccaagaagctg
gtcgagaaggagaagccggaggtctgggatgtccttgacgaggtcattcgggaacacccg
gtcatgctgaaccgggccccgactctgcatcgtttgggaatccaggcttttgagccggtt
cttatcgaaggcaaggcgatacaactgcaccccttggtctgtaccgcttttaacgccgac
ttcgacggtgaccagatggccgtgcatctgcctctttctatcgagagtcagatcgaggcc
cgggtactgatgatgtcgaccaacaacatcctgtcgcccgccaatggcaagcccattatt
gtgccctcgcaggacatgattcttggtctctattacatgactcgtgagcgagcctttgtt
aaaggtgacagcaaaagcttcttctctcccgaagaagtgcgtattgcctatgacgctggc
gaggctgacctgcaggccaagatcaaggttcgcatggtgaccggcgaggggcgcgaggtt
gcgctggtcgatacgacggtagggcgggtgctgttgcgcgaaatcgttccgacatccatt
ccctttgaacacatcaaccggacgatgaccaaaaaacaggtggctgagttgatcgacacg
gccttccgtctggctggtcccaaggaaaccgtcatccttgccgaccgccttaaggatacg
ggttatcgcttttctacaattgcgggtatttctatttgtctcgacgatatggttattcct
gccgccaagcaggaatatattgacaaggccgttcaagaggttacggaaatacagaatcag
tacacagaaggtctgatcaccgatggcgagcgttacaataaagtcatcgacatctgggcc
aagtgtaccgaagatatcgccggcatcatgctgggcaacctctcggttgacgtgctgacg
gacccggagtccggcgagcaggtcaagattccttccttcaatgccatccatatgatggcg
gactctggagcccgaggcagtgctcagcagattcggcagcttgccggtatgcgcgggctg
atggcgaagccctccggtgagatcatcgagacgccgattacggctaacttccgtgagggt
ttgactgttctgcagtacttcatctcgacccacggtgcccgcaaaggtctagctgacacg
gcgctcaagacggcaaattccggttacctgacgcgccgtcttgttgacgttgcccaggac
gccattatcactgagcttgactgtggcacccttgacggcatcctcgtttcatctctcact
gagggtggcgaagtcattgaaccactcggagacaggattctcggccgttcagcccttgaa
gatgtgctggaccctgtaacaggggatattcttgtggaggcgaaccaggaaatcgatgag
accctggtgaccaaaatcgagaattcaggcattgagaagcttaaaatacggtctgtactg
acatgccaaagtcgtcgaggtatctgcgctacctgttatggtcgcgatctggctcgcggg
cacatggtcaacctgggtgaagctgtcggggttattgccgcccagtccattggtgaacct
ggcacacagcttaccatgcgtactttccatatcgggggtaccgcgtcgcgtcgcgctgag
cagacctctcttgaagcccgtttcgacgggacgcttcgatacatcaatctgaacacggtt
gtcgacagcgccgggttccatgttgtcatgaatcgcaatggcgaggtcgctgttattgat
gaaaccggccgtgaacgtgagcgctatggtgttgtgtatggggctaagctgcgtgttggc
cccgacggcgccatcaaggctggtggcctgattgccgagtgggatccctacaccatgccg
atccttacggaaggctccggtcgggtacacttcggtgatgtcatcgaaggggtcagcatg
gaggagcagctcgatgatgtgacagggttgtcccgtaaggtcatcattgagtccaaggca
gccgatcgtcggcctcgtatcaccctgaaggatgaagacggcaagactgtaaaattgcct
agtggcgccgctgcccgctacatgcttcccgttggcgccaatatagtcgttaccgaagat
gcccttgtgggcgccggtgatattctggccaaaatcccaagggaaactaccaaaacaaaa
gacatcaccggtggtctgccgcgggttgctgagctcttcgaggcccgtaagcccaaggag
tttgctgttatttctgagatcgatggggttgtctcctacggcaaggattccaagggcaag
cgcaaggtcatcgttaccccggaggtgggtgaaccgaaggagtatctgattcccaagggg
aagcatatcagcgttcacgagggcgattccgtcaaggccggtgaggctctgatggatggc
tccagcaacccccacgacattctacgtgtcctgggcgagaaggaattggccaaatacctc
gttgacgaagtacaggaggtctatcgactccagggcgttaagatcaacgacaagcatatc
gaaacgatcgtgcgtcagatgctgcgccgggttcgcatcaaagaggttggggatacacga
ttccttcttgatgaccaggttgagaggtgggagtttgaacaggagaacctgcgtgttatg
ggcgaagagggtcagccggccgtcggtgagcctctgatgctggggattaccaaggcctct
ctgtcgaccgagtcttttatctccgccgcctccttccaggagacgaccaaggtgttgact
caggctgccatcgaggggaaggtcgattttctgcgtgggctcaaagaaaacgtcatcatg
ggacgcttgattcctgccggcacgggtatctccaaataccgcagtgccaagcttaatatt
gaggaaccgcaagaggtgatcgaggtctatgaggacgatatcgatgaggatattgtcgaa
gagagcgaagatgtctctgttgagtaa
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integrated database retrieval system
