Desulfuromonas sp. AOP6: AOP6_2976
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Entry
AOP6_2976 CDS
T08366
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dep
Desulfuromonas sp. AOP6
Pathway
dep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOP6_2976 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dep03400
]
AOP6_2976 (mfd)
Enzymes [BR:
dep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOP6_2976 (mfd)
DNA repair and recombination proteins [BR:
dep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOP6_2976 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
AAA_16
UB2H
CutA1
Motif
Other DBs
NCBI-ProteinID:
BCA81189
LinkDB
All DBs
Position
complement(3243396..3246884)
Genome browser
AA seq
1162 aa
AA seq
DB search
MQNEQTHTDKKPTSVEECVDSLLERRQHAEVVGLTGSSSAYVLARYLAKSTETLLVLTAN
QKQADALASALDFYHGRQGEIVVIPHWEVHPYEPLTPHPEVEATRLSALAGLLQGRVRAA
VVSVRALMQKVIPGSVLTNLSGLLVCGDDYERTALIDRLLALGYNPVPLVEDRGTFSIRG
DILDIFPASRQAPVRIEFFGDTIERMRPFQAATQRSEQQELEEIELLPAREMILTGDYLE
TFARRLKERCDDLGLPRTQRESILEEAREGLLSPGRSFLLPLNYPSLDTLFDYLPKARLV
VVDPPEVEQEIDAFSAEIAEGERHAANREEAYAPAAELYLTPVEVENALAGGTGRIDLPI
LPVYRLQEDRELYRLRVDGNGDIRSLFKEGEGLAQFADRMAQWQEESWRILLVCHQRGQA
ERMADLLRPYGLELFFSGSSKAHSPEPGEIALVRGELQAGFRLPDEKWAVITEEEIFGQR
VRRRALTEARAKALLSSLAELKEGDYVVHADHGIALYRGLQHLEMNGIEGDFLQIEYAGG
DRLYLPVDRIEKVQKYVGGEGHVPRLDRLGSGSWEKARLRARAAVEELARELLNIYARRE
MAEAYSFSPPDRTFREFEAAFPYEETPDQLEAITDTLDDMQSGKPMDRLICGDVGFGKTE
VAIRAAFKAAMDGKQVAVLVPTTILAQQHLESFRERFKGYPLEVEMVSRFRTPKEQKEIL
QKTAEGKIDVLIGTHRLLQRDVRFRDLGLMIVDEEQRFGVSHKERLKKLRAEVATLTLTA
TPIPRTLHMGLMGLRSLSVIDTPPIDRLAVRTYVTRFDDELIREAVLRELRRGGQVFFVH
NRVQTIGAMAEFLGKLIPEAKIAVGHGQMGERELEKVMLEFIEGKTNVLVSSTIIENGLD
ISRANTIIVNRADCFGLAQLYQLRGRVGRSNQRAYAYLLIPGEGSLTREARERLKVLQEL
TELGAGFRIASHDLELRGAGDLLGDRQAGQIAAIGFELYAELLEETIHELRGQTMEERID
PEIRLGVSAFLPEKYVPDPNQRLVLYKKMASVPDEAQLYAIADELRDRYGEIPPPTSLLF
EVMKLRVLMKQLKVEFAEFDGRQLVFGFHAETPVPPDKILQLIEDTSGRYRFTPDYRLSV
RMAKTSAEELVAAAKKELQAFL
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacgagcagacacataccgataaaaagccaacctctgtggaggagtgcgtcgac
agtctgctggagcgtcgtcagcatgccgaagttgtcggtctgacaggttccagttccgcc
tatgtgctggcgcgctatctggccaaaagtaccgagaccctgctggtgctgaccgcgaat
cagaaacaggccgatgccttggcttcggcgcttgatttttatcatggccgtcagggtgaa
atagtggtcattcctcattgggaagtgcatccctacgaaccccttacgccccacccggaa
gttgaagcgacccgtctttccgcccttgccggtctgctgcaggggcgcgtgcgtgcggcg
gttgtttcggtgcgggcgctcatgcagaaggtcatacccgggtcggttctgaccaatctg
agcggcctgctggtctgtggggacgattacgagcgcacagccctcatcgatcgcctgctg
gctttgggctacaacccggttcccctggtggaggatcggggcaccttttcgatccggggc
gatattcttgacattttcccggcctcccgccaggctccggtccgtatcgagttctttggc
gacaccatcgaacgcatgcgccccttccaggcggcgacccagcgctcggaacagcaggaa
ctggaagaaattgaactgctaccggcccgggaaatgattctgacgggggattacctggaa
actttcgcccggcgtctcaaagaacgctgcgacgacctcggtttgccgcgcacccagcgg
gagtccatcctggaagaggcccgcgaagggttgctttcgcctggacgctccttcctgctt
cccttgaactacccttccctggataccctgttcgattatctccccaaggcccgactggtg
gtcgtcgatccgcccgaagtcgagcaggaaatcgatgccttcagtgccgagattgccgaa
ggggaaaggcatgctgccaatcgggaagaggcctatgccccggccgctgagttatatctg
actccagtcgaagtggagaacgccctggccggaggtacgggtcgtatcgacctgcccatc
ctgcccgtgtatcgcctgcaggaggaccgtgagctgtatcggcttcgggtcgatggcaat
ggggatatccgctccttgttcaaagagggggaaggcctggcccagtttgccgacagaatg
gcgcagtggcaagaggagtcttggcgcatcctgctggtctgtcatcagcggggtcaggcg
gaacgcatggccgatctgctgcgtccctatggcctggaactgtttttctccggaagctcc
aaggcgcacagccccgaaccaggtgaaattgcactggtgcggggtgagttgcaggcgggt
ttccgtctccccgatgaaaagtgggcagtcatcaccgaagaggaaatcttcgggcagcgg
gttcgccgccgggcccttaccgaggcgcgggccaaagctcttctctcctcgctggcggaa
ctcaaggaaggcgactatgtcgtgcatgccgatcacggcatcgccctctatcgtggcctc
cagcacctggagatgaacggcatcgaaggggatttccttcagatcgagtacgccggtggc
gatcggctgtacctgccggtggaccgcatcgaaaaagtccaaaaatacgtcggcggcgag
ggacatgtgccccgcctcgaccgtttgggcagtgggtcctgggaaaaagccaggctgcga
gccagggctgcggtggaggaactggcccgtgaactgctcaatatctatgcccgccgcgag
atggctgaggcctatagtttttcgccgccggaccggaccttccgggaattcgaggcagcc
ttcccctatgaggagaccccggaccagctcgaagccattaccgacactctggacgatatg
cagtcaggcaagcccatggatcgcctgatctgcggtgatgtcggcttcggcaagacggaa
gtagccatcagagcggcctttaaagcggctatggatggcaagcaagtggcggtgctggtg
ccgaccaccattctcgcccagcaacacctggagagtttccgggagcgtttcaagggctat
ccccttgaggtggagatggtctcgcgttttcgtacgcccaaggagcagaaggagattctg
cagaagacagcggaaggcaagattgacgtccttatcggtacccatcgcctgctgcagagg
gacgtccgctttcgcgacctgggtctcatgatcgtcgatgaggagcagcgtttcggtgtt
tcccacaaagaacgactcaaaaagttgcgggccgaagtggcgactctcaccctcaccgcc
acccccataccgcgcaccctgcacatgggcctcatggggctgcgcagcctttccgtcatc
gatacgccccctatcgatcgattggcggtgcgcacctatgtgacacgcttcgacgacgag
ctgatccgcgaggcggtattgcgggagttgcgccgtggcggccaggtcttttttgtccac
aaccgggtgcagaccatcggtgccatggccgaatttttaggcaagctcatacccgaggcc
aaaattgccgtcggccatggtcagatgggcgagcgagagctggaaaaggtcatgctcgaa
tttatcgagggcaaaaccaacgttctggtcagcagcaccatcattgaaaacggtctggat
atctcccgggccaataccatcatcgtcaatcgggctgattgtttcgggctggcccagctt
tatcagctccgtggcagggtcgggcgctccaatcagcgggcctatgcctatctgctcatt
ccaggagaaggctccctgacccgtgaggcacgggaaaggctgaaggttttgcaggagtta
acggagctgggggcaggtttccgcatcgccagccatgacctggaactgcgtggcgccggc
gatctgctgggagacaggcaggccggtcagatcgcggccatcggcttcgagctctatgcc
gagctgctggaagagacgattcacgaactgcgcgggcagacgatggaagagcgtatcgat
ccggaaatccgtctgggggtttctgctttcctgccggagaaatatgttcccgatcccaac
cagcgcctggtgctttacaaaaaaatggcttcggtacctgacgaggcacaactctacgcc
attgccgatgaattgcgggatcggtatggagagattcccccaccaacatcactgctcttc
gaggtgatgaagttgcgtgtcctgatgaagcagttgaaggtggagtttgcagaatttgac
ggtcgccagctggtttttggttttcacgccgagacgcctgtacccccggataaaattcta
caattgatagaagacaccagcggtcgctatcgctttaccccagattatcgcctttcggta
cggatggcgaaaacctccgccgaagagctagtagccgcggctaaaaaagaattgcaagct
tttttgtaa
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integrated database retrieval system
