Devosia sp. H5989: XM25_03245
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Entry
XM25_03245 CDS
T04003
Symbol
rbcL
Name
(GenBank) ribulose 1,5-bisphosphate carboxylase
KO
K01601
ribulose-bisphosphate carboxylase large chain [EC:
4.1.1.39
]
Organism
deq
Devosia sp. H5989
Pathway
deq00630
Glyoxylate and dicarboxylate metabolism
deq00710
Carbon fixation by Calvin cycle
deq01100
Metabolic pathways
deq01110
Biosynthesis of secondary metabolites
deq01120
Microbial metabolism in diverse environments
deq01200
Carbon metabolism
Module
deq_M00165
Reductive pentose phosphate cycle (Calvin cycle)
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
XM25_03245 (rbcL)
09102 Energy metabolism
00710 Carbon fixation by Calvin cycle
XM25_03245 (rbcL)
Enzymes [BR:
deq01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.39 ribulose-bisphosphate carboxylase
XM25_03245 (rbcL)
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Paralog
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Motif
Pfam:
RuBisCO_large
RuBisCO_large_N
Motif
Other DBs
NCBI-ProteinID:
AKR54831
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Position
656376..657836
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AA seq
486 aa
AA seq
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MDTAAKTVRGKDRYKSGVMEYRKMGYWEPDYEPKDTDVIALFRITPQDGVDPIEAAAAVA
GESSTATWTVVWTDRLTATEKYRAKAYRVDEVPNAPGQYFAYIAYDLDLFEPGSIANLSA
SIIGNVFGFKPLKALRLEDMRFPVAYVKTFQGPATGIVVERERLDKFGRPLLGATVKPKL
GLSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRDRFLYCMEAVNKAEAATGEIKGT
YLNVTAGDMEAMYERAEFAKELGSCIVMIDLVIGYTAIQSMAKWARKNDMILHLHRAGHG
TYTRQKSHGVSFRVIAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREGFNPMRLE
HGVFFDQDWASLNKLMPVASGGIHAGQMHQLIHLLGEDTILQFGGGTIGHPMGIQAGATA
NRVALEAMIYARNSGRDYLAEGPQILQEAARHCLPLKQALDTWGDVTFDYTSTDSPDFVP
VATAAE
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggataccgccgcaaagaccgtcaggggcaaggaccgctacaagtccggcgtcatggaa
taccggaagatgggctattgggagcccgattacgagccgaaggacaccgacgtcatcgcg
ctcttccgcatcaccccgcaggatggcgtcgaccccatcgaagccgccgccgccgtcgcc
ggtgaatcctccaccgctacctggaccgtcgtctggaccgaccgcctgaccgcgaccgag
aagtatcgcgccaaggcctatcgcgtggacgaagttcccaacgcccccggccagtacttc
gcctatatcgcctacgatctcgatctcttcgagcccggctcgatcgccaacctatcggct
tcgatcatcggcaacgtcttcggcttcaagccgctcaaggccctgcgcctcgaggacatg
cgtttccccgtcgcctatgtgaagactttccagggcccagcgaccggcatcgtcgtcgag
cgcgaacgcctcgacaagttcggccgcccgctcctcggcgccaccgtcaagcccaagctc
ggcctctccgggcgcaattacggccgcgtcgtctacgaggcgctcaagggcggcctcgat
ttcaccaaggacgacgagaacatcaacagccagccgttcatgcactggcgcgaccgcttc
ctctactgcatggaagccgtcaacaaggccgaggccgccaccggcgagatcaagggcacc
tacctcaacgtcaccgccggcgacatggaggccatgtacgagcgcgccgagttcgccaag
gaactgggctcctgcatcgtcatgatcgatctggtgatcggctacacggccatccagtcg
atggccaagtgggcgcgcaagaacgacatgatcctgcacctccaccgcgccggccacggc
acctacacgcgccagaagagccacggcgtctccttccgcgtcatcgccaagtggatgcgc
ctggccggtgtcgaccacatccacgccggcaccgtcgtcggcaagctcgaaggcgatccg
aacaccaccaggggctactacgacatctgccgcgagggctttaaccccatgcgcctcgaa
cacggcgtcttcttcgaccaggattgggcgagcctcaacaagctcatgcccgtggcctcg
ggcggcatccatgccggccagatgcaccaactcatccacctcctcggcgaagacacgatc
ctccagttcggcggcggcaccatcggtcacccgatgggcatccaggccggcgccaccgcc
aaccgcgtcgctctcgaagccatgatctacgcccgcaattccggccgcgactacctggcc
gaaggcccgcagatcctccaggaagccgcccgccactgcctgcccttgaagcaggccctc
gatacctggggcgacgtcaccttcgactacacctcgacggactcgcccgatttcgtgccc
gtcgccacggccgccgaataa
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