Devosia sp. H5989: XM25_06890
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Entry
XM25_06890 CDS
T04003
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
deq
Devosia sp. H5989
Pathway
deq03030
DNA replication
deq03430
Mismatch repair
deq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XM25_06890
03430 Mismatch repair
XM25_06890
03440 Homologous recombination
XM25_06890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
deq03032
]
XM25_06890
03400 DNA repair and recombination proteins [BR:
deq03400
]
XM25_06890
Enzymes [BR:
deq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XM25_06890
DNA replication proteins [BR:
deq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XM25_06890
DNA repair and recombination proteins [BR:
deq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XM25_06890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH
Motif
Other DBs
NCBI-ProteinID:
AKR55532
LinkDB
All DBs
Position
complement(1446732..1450178)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPGPGFIHLHVHSAFSLLEGAIQLAKILELAKEDKQPAIGIADTNNLFGALELSEKATSK
GIQPLIGCELALDFWTADDRGPERGNFGKGGVVLMAATGEGFSNLSRLVSRAYLEGENGR
AAAKIGWLDRDNLQGIICLTGGPEGSVDPFFASGLEAHAHSRLDRLRELFDDRLYIELQR
HGRHNEALVEPQLLDYAYKRGVPLVATNEPFFKSRKDFEAHDALLAIAGGTVLAQTERRK
LSDQHYFKTRAEMMELFADLPEALDSTIEIAQRTSYRPRTRGPILPKFAAAPGVSEDEAV
AAEAAALGKMARDGLAKRFEVNGLAPGWTAEQYHERLEFELGIIQKMKFPGYFLIVADFI
QWAKGQGIPVGPGRGSGAGSLVAWATTITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQ
DRREEVIRYVQQKYGAEQVAQIITFGTLQARAVLRDVGRVLQMPYGQVDRICKLVPANPA
DPWTLERALAEVPQLRAMRDEDETVSQLLEIGQALEGLFRHASTHAAGIVIGDRPLQELV
PLYRDPRSDMPVTEYNLKWVEPAGLVKFDFLGLKTLTTISYAVKMINGENGTFDIDKIPL
DDEATYKLYAGGDTAGIFQFESPGMRRALIDLKPDRIEDLIAMNALYRPGPMDNIPSFCD
RKHGREQVEYPHEALSSVLDETYGIIVYQEQVMQIAQVLSGYSLGEADMLRRAMGKKIKA
EMDAQRVRFRDGAIKNGVSEALSDTIFDLLAKFANYGFNKSHAAAYAWVSYQTAYLKTHY
PEEFLAASMTLDMGLTEKLADFRREALRHNITIVPPCVNQSEAVFSVRDKKVHYGLAAVK
GIGRQVADHIAEIRGDRPYADLADFATRVDPKIVNRRTLETLVNAGAFDSLVSRREQAFA
AIDSVLGTAQRVASDRNDGIVDMFASDKPEPIILPEMFEPWSLAERLEREYSAIGFHLSA
HPLDAYTDLFEKLRVQRWGDFERAVKEGARAGRIAGTLSSRQDRRTRKGTPMAILNLSDQ
SGGYECIAFSEQISLYGSVLETGRSLILEVEADERPDGISLRLIKAESIDGATEKLGRQL
TVFPESEKCLPAIRAQLKPGGEGAVTLIVSRDGGAREYEIKLPGSFKLTAEVAGGIKALA
GVTDVRLN
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcccggtccaggtttcattcatctgcacgtccactcggccttttcccttctcgaaggg
gccatccagctcgccaagattctggagctggccaaggaggacaagcagcccgcgatcggc
atcgccgacactaacaacctcttcggcgctctcgaactctccgaaaaggccaccagcaag
ggcattcagccgctgatcgggtgcgagctggcgctcgatttctggaccgccgacgatcgc
gggcccgaacgcggcaatttcggcaagggcggggtcgtgctcatggcggcgacgggtgag
gggttctccaatctctcgcgtctggtcagccgcgcttatctggaaggcgagaacggcagg
gccgccgccaagatcggctggctcgatcgtgataacctccagggcatcatctgcctgacg
ggcgggccggaaggatcagtcgatcccttcttcgccagtggccttgaagcccacgcccat
tcgcggctcgatcggctgcgcgagctgttcgacgaccggctctatatcgagttgcagcgc
cacggacgccacaacgaggcgctcgttgagccgcagctgctcgactacgcctataagcgc
ggcgttccgctcgttgccacgaacgagccgttcttcaagtcgcgcaaggatttcgaggcg
catgacgcgctgctggcaattgccggcggcaccgtgctcgcccagaccgagcggcgcaag
ctctcggaccagcactatttcaagacgcgcgccgagatgatggagctcttcgccgatctc
cccgaggcgctcgacagcaccatcgagatcgcgcagcgcacgagctaccggccgcgcacg
cgcgggccgatcctgcccaagttcgccgctgccccgggggtgagcgaggatgaggccgtg
gccgccgaagcggcagcgctcgggaaaatggcgcgtgatggcctcgccaagcggttcgag
gtcaacggcctggcgccgggttggaccgccgagcagtatcatgaacggctcgagttcgag
ctcggcatcatccagaagatgaagtttcccggctacttcctcattgtggccgacttcatc
cagtgggcgaaagggcagggtatacccgtcggccccggccgtggttcgggcgccggttcg
ctcgtcgcctgggcgacgaccatcaccgacctcgacccgctccgctacaacctgctcttc
gagcgcttcctcaatccggaacgcgtctcgatgcccgacttcgatatcgacttctgccag
gatcgccgcgaagaggtgatccgttacgtgcagcagaaatacggggccgagcaggtggcc
cagatcatcaccttcggtacgcttcaggcgcgcgctgtgctgcgcgacgtgggccgcgtg
ctgcagatgccgtacggccaggtggatcgcatctgcaagctcgttccggccaatcccgcc
gatccctggacactggaacgtgccctcgccgaagttccgcaattgagggcgatgcgcgac
gaggacgaaaccgtctcccagctgctcgaaatcggccaggcgctcgaagggctcttccgc
cacgcttcgacgcacgctgccggcatcgtgatcggcgaccgcccgctccaggaactggtg
ccgctttaccgcgatccgcgctcggacatgccggtcaccgagtacaacctcaagtgggtc
gagcccgctggcctggtgaagttcgacttcctgggcctcaagacgctgacgaccatcagc
tacgccgtcaagatgatcaacggcgagaacggcaccttcgacatcgacaagattcccctc
gatgacgaggcgacctacaagctttacgcgggcggggacacggcgggtatcttccagttt
gaaagtccgggcatgcggcgtgcccttatcgacctcaagcccgaccgcatcgaagacctc
atcgccatgaacgcgctctatcggcccggcccgatggacaacatccccagcttctgcgac
cgcaagcacggtcgcgagcaggtggaatacccgcacgaggccctcagttcggtgctcgat
gaaacctacggaatcatcgtctaccaggagcaggtgatgcagatcgcccaggtgctctcg
ggctattcgctcggcgaggccgatatgctccgccgcgccatgggcaagaagatcaaggcc
gagatggacgcccagcgcgtccgattccgcgacggcgccatcaagaatggcgtctcggaa
gccctttccgatacgatcttcgatcttctcgcaaagttcgccaactacggcttcaacaag
agccacgcggccgcctacgcctgggtgtcctatcagacggcctacctcaagacccattat
cccgaggagttcctcgcggcctcgatgaccctcgacatggggctcaccgagaagctggcg
gatttccggcgcgaggccttgcgccacaacattaccatcgtgcctccgtgcgtgaaccag
tccgaggcggtcttctcggtgcgtgacaagaaggtccactacggtctggcagcggtcaaa
ggcatcggccggcaggtggccgaccatatcgccgagattcggggcgatcgcccgtacgcg
gatctcgccgacttcgccacgcgcgtggaccccaagatcgtcaaccgacgcacgctcgag
acgctggtcaatgccggcgccttcgattccctggtttcgcggcgcgagcaggcctttgcc
gcaatcgactccgtgctgggcaccgctcaacgcgtcgcgtctgaccgcaacgacggcatc
gtggacatgtttgcgtccgacaagcctgagccgatcatcctgcctgagatgttcgagccc
tggagcctggccgaacggctggagcgtgagtactcggccatcggcttccatctctcggct
cacccgctcgacgcctataccgatctcttcgagaagctgcgcgtgcagcgctggggcgat
ttcgagcgtgccgtcaaggaaggggcgcgggcggggcgtattgctggcacgctgtcctcg
cggcaggaccgacggacgcgcaagggcacgcccatggccatcctcaacctctccgatcag
agcggcggctacgagtgcatcgcgttctccgagcagatttcgctctacggttcggtgctc
gaaaccggtcgttcgctgatcctcgaggtcgaggcggacgagcgtccagatggaatcagc
ctgcgcttgatcaaggcggaatcgatcgacggcgcaaccgaaaagctcgggcgccagctc
accgtgttcccggaaagcgagaagtgcctgccggccattcgtgcccagctcaagccgggt
ggtgagggggcggtgacgctcatcgtgtcgcgggatggcggtgcgcgcgaatacgagatc
aagcttccgggcagcttcaagctgacggcggaggtggcgggcggcatcaaggccctggcc
ggggtaaccgacgttcgcctcaattag
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