Devosia sp. H5989: XM25_09215
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Entry
XM25_09215 CDS
T04003
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
deq
Devosia sp. H5989
Pathway
deq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XM25_09215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deq03019
]
XM25_09215
03016 Transfer RNA biogenesis [BR:
deq03016
]
XM25_09215
Enzymes [BR:
deq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XM25_09215
Messenger RNA biogenesis [BR:
deq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XM25_09215
Transfer RNA biogenesis [BR:
deq03016
]
Prokaryotic type
tRNA degradation factors
XM25_09215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HVO_A0261_N
Motif
Other DBs
NCBI-ProteinID:
AKR55977
LinkDB
All DBs
Position
1922102..1924408
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AA seq
768 aa
AA seq
DB search
MAKKPAERPTPRSGKAGPSRSSGPKRPRRNTDELPTREQILEAMATLPDIKGKRDLAKVL
GVHGDMRTPFKRLLREMEGEGLVTRTRKTLRVTSALPAVTVLDIPSDADPDNLHAFPATW
NEEEGERPRVEVVQPPNARVAPAPGDRILARIDPGENVLPHYTAHAMKILDKPRRGQIGI
VRVDEDGARLIPVDRKQKEMRITGDDLGAARDGDLVEVEVKFSGRLMIPRAKVVEVIGNP
ATEGAVSLIAIHNLDIPYRFPASVEKAAEAATEATLKGREDWRQIPLVTIDPPDAKDHDD
AVYAEPDKDPANPGGHIIYVAIADVAAYVRPGETLDREAYLRGNSVYFPDRVVPMLPERI
SNDLCSLKEGENRPSMAVRMVYSSEGIKKSHSFHRIMMRSAAKLSYQRAQDAIDGNPDDQ
TGPLLEPVLKPLWKAYAAMARARDKRGPLDLDLPERKILLNEQGMVDRIYIPDRLDAHRL
IEEMMIAANVAAAETLERHKTPLLYRVHDTPSREKLTALREFLTSLDLSFDKTDAVRPAN
FNRVLATAGKAGKIEQVSEMVLRSQAQAEYSAENYGHFGLNLDRYAHFTSPIRRYSDLIV
HRALITALNLGNDGLSQSEIIKLPGIAQHISSTERRAMAAERETADRLLAGFLATKIGAQ
FVGRISGVTKSGLFVRLNETGADGFIPASTLGQDYYRYVEEQQAMIGDRTGEMFRLGDTV
EVRLLEAAPVAGALRFELLSEGPRVNPSSYKRGGKRPTRSYGPKGRRR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaagccagccgaacgccctacgccacgctcaggcaaagccggcccgagcaga
tcctccggccccaagcgcccacgccggaataccgacgagctgcccacccgcgagcagatc
ctggaggccatggccaccttgcccgacatcaagggcaagcgcgacctggccaaggtcctg
ggcgtgcacggagacatgcgcacgcccttcaagcggctgctgcgcgagatggaaggcgaa
ggcctggttacgcgtacgcgcaagacgctgcgggtcacctcggcgctccctgccgtaacc
gtcctcgacatcccttccgatgccgacccggacaatctgcacgccttcccggccacctgg
aacgaggaagagggcgaacgcccgcgtgtcgaggtggtgcagccgccgaacgcgcgcgtc
gcccctgcccccggcgaccgcatcctggcgcgcatcgatccgggcgagaatgtcttaccg
cactacactgcccacgccatgaagatcctggacaagccccggcgcggccagatcggcatc
gtgcgcgtggacgaggatggggcgcgcctcatccccgtggaccgcaagcaaaaggaaatg
cggatcaccggcgacgacctgggcgcggcgcgtgacggcgacctggtcgaggtcgaggtc
aagttctcggggcgcctcatgatcccgcgcgccaaggtcgtggaagtcatcggcaacccg
gccacggaaggcgccgtgagcctcatcgccatccataacctcgatatcccctaccgcttc
cccgcctcggtggagaaggcggccgaggccgctaccgaagccacgctcaagggccgcgag
gactggcggcaaatcccgctcgtcactatcgatccgcccgacgccaaggaccacgacgac
gccgtctacgccgagcccgacaaggacccggccaatccgggtggacacatcatctacgtg
gccatcgccgacgtcgccgcctatgtgcgtcccggcgagacgctcgaccgcgaggcttac
ctgcgcggcaactcggtgtacttccccgaccgggtggtgccgatgttgcccgagcgcatc
tccaacgacctgtgttcgctcaaggaaggcgagaaccggccatccatggcggtgcgcatg
gtctactcgtcagagggcatcaagaagagccacagcttccaccgcatcatgatgcgctca
gccgccaagctgagctaccagcgcgcccaggacgccatcgacggcaatccggacgaccag
accggcccgctgctcgaacccgtcctcaagccgctctggaaggcctacgccgccatggcc
agggcgcgcgacaagcgcggcccgctcgatctcgacctgcccgagcgcaagatcctgctc
aacgagcagggcatggtcgaccgcatctacattcccgatcggctcgatgcccatcgcctg
atcgaggagatgatgatcgccgccaacgtcgcggccgccgaaacgctcgagcgccacaag
acgcccctgctctaccgcgtccacgacacgccgagccgggagaagctcaccgcactgcgc
gagttcctgacctcgctggacctttcgttcgacaagaccgatgccgtgcgccctgccaac
ttcaaccgcgtgctcgccaccgccgggaaggccggcaagatcgagcaggtgagcgaaatg
gtgctgcgcagccaggcgcaggccgagtactccgccgagaattacggccacttcggcctc
aacctcgaccgctacgcccacttcacctcgcccatccggcgctactcggacctcatcgtg
caccgggcgctgatcacggcgctcaacctgggcaatgacggcctgagccagtccgaaatc
atcaagctgccgggcatcgcccagcacatctcctcgaccgagcggcgcgccatggccgcc
gagcgcgagacggcggaccggctgctggccgggttcctggccaccaagatcggcgcacaa
ttcgtggggcgcatttcaggcgtgaccaagtccggcctcttcgtgcgcctcaacgaaacc
ggcgcggacggcttcattccggcttccacgctcggccaggactattatcgctatgtcgag
gaacagcaggccatgatcggcgaccgcacaggcgagatgttccgcctgggcgatacggtg
gaagtgcgcctgctcgaggccgcccccgttgccggcgcgctgcgcttcgagttgctgtcc
gaaggcccccgcgtcaatccgtcctcttacaaacgcggcgggaaacgcccaactaggtcg
tacggcccgaagggccgcaggaggtag
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