Devosia sp. H5989: XM25_09635
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Entry
XM25_09635 CDS
T04003
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
deq
Devosia sp. H5989
Pathway
deq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XM25_09635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deq03021
]
XM25_09635
03400 DNA repair and recombination proteins [BR:
deq03400
]
XM25_09635
Enzymes [BR:
deq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XM25_09635
Transcription machinery [BR:
deq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XM25_09635
DNA repair and recombination proteins [BR:
deq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XM25_09635
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AKR56057
LinkDB
All DBs
Position
complement(1993637..1997776)
Genome browser
AA seq
1379 aa
AA seq
DB search
MATTFNGRRKVRKTFGRIREVTEMPNLIEVQKASYDQFLLVDEPKGGRPEEGLQAVFKSV
FPITDFSNTASLEFVKYEFEQPKYDVDECRQRDMTFAAPLKVTLRLIVFEVDEETGARSV
KDIKEQDVYMGDMPFMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAG
RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLKALGMDAEEILSTYYNTLNYEKTK
TGWQVPYNWEKMKNAKPTHDLIDAKTGDVVHEGGKKLSARQAKKLAENGLTHLLAVDEDL
YGTYVAEDLINFQTGEVYVEAGDEIDEKTLNKLKELGFDELPILDIDHVNVGAYIRNTLA
VDKNESREDALFDIYRVMRPGEPPTVETAEAMFNSLFFDSERYDLSAVGRVKMNMRLDLD
VDDTVRILRKEDIVEVVRTLVNLRDGRGEIDDIDNLGNRRVRSVGELMENHYRLGLLRME
RAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPYR
KIVEGHVTDEVVYLSAMEEAKHYVGQANAKLNEKGEFVDDLVLARHAGDNGLTPKELVDL
MDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVARDS
GAAIVAKRKGIVDQVDATRIVIRATEETDASKSGVDIYNLMKFQRSNQSTCINQRPLVVV
GDHVEAGDIVADGPSTELGDLALGRNVLVAFMPWNGYNFEDSILLSEKIAMQDVFTSIHI
EEYEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVHIGAEVGPGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGDAGTVVEVRVFNRHGIDKDERAMAIEREEI
ERLAKDRDDEQSILDRNVYARLKEMLFGKAATAGPKGYVVGTKLNDQMFEAQPRSKWWQF
AVEDDKVMTEMEALHAQYEESRRLLEQRFIDKVDKLQRGDELPPGVMKMVKVFVATKRKI
QPGDKMAGRHGNKGVVSKITPLEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWA
CAGMGKKIDEMVRIYQQNGDLKPLKREIGDLFSDDDYVSNLDDDSVVRLGEHLSKGVSIA
TPVFDGAKEANIVEMLERAGLKSSGQSTVFDGRTGEQFDRQVTVGYIYMLKLHHLVDDKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTIKSDDVAGRTK
VYEAIVRGDDTFEAGIPESFNVLVKEIRSLGLNVELDTAEAPGTEQAEAELEPPQAAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgttcaacggccgccgcaaggtacgcaagactttcggccgcattcgcgaa
gtcacggagatgccgaacctgatcgaggtccagaaggcctcctatgatcagtttcttctg
gtcgacgagcccaagggcggccgtccggaagaaggacttcaggctgtcttcaaatcggtc
tttccgatcaccgacttttccaacaccgcttccctcgagttcgtgaagtacgagttcgag
cagcccaagtatgacgtcgacgagtgccggcagcgcgatatgaccttcgccgcgccgctc
aaggtgacgctgcggctgatcgtgttcgaagtggacgaggaaaccggtgcccgctccgtc
aaggacatcaaggagcaggacgtctacatgggcgacatgcccttcatgacctcgaacggc
acgttcatcgtgaacggcaccgagcgcgtgatcgtctcccagatgcaccgttcgccgggc
gtgttcttcgaccacgacaagggcaagacccactcgtcgggcaagctgctcttcgccggc
cgtatcattccctaccgcggttcgtggcttgatatcgagttcgacgccaaggacatcgtc
tatgcgcgcatcgatcgtcgccgcaagattccggtgacctcgctgctcaaggcgcttggc
atggatgccgaggaaatcctcagcacctactacaacacgctcaactacgagaagaccaag
accggctggcaggttccctacaactgggaaaagatgaagaatgccaagccgacccatgac
ctgatcgacgccaagaccggcgacgtggttcatgagggcggcaagaagctctcggcccgc
caggccaagaagctcgccgagaatggcctgacccacctgctcgcggtcgatgaagacctc
tacggcacctatgtcgccgaggacctcatcaacttccagaccggtgaagtctacgtcgaa
gccggtgacgagatcgacgagaagacgctcaacaagctcaaggaactgggcttcgacgag
ctgccgatcctcgacatcgaccacgtcaatgtgggcgcctacatccgcaacacgctggcc
gtggacaagaacgagagccgcgaagacgctctgttcgacatctaccgcgtgatgcgtccg
ggcgagccgccgaccgtcgagaccgccgaagccatgttcaactcgctgttcttcgacagc
gagcgctatgacctgtcggccgtcggccgcgtcaagatgaacatgcgtctggacctcgac
gtcgatgacaccgtgcgcatcctgcgtaaggaagacatcgtggaagtcgtccgcacgctg
gtgaacctgcgtgacggccgcggcgagatcgacgacatcgacaacctcggcaaccgtcgc
gtgcgttcggtcggcgagctgatggagaaccactaccgtcttggcctgctccgcatggag
cgcgcgatcaaggaacgcatgtcgtcggtcgaaatcgacaccgtcatgccgcaggacctg
atcaacgccaagccggcagcggccgcagtccgggagttcttcggttcgtcccagctgtcg
cagttcatggaccagaccaacccgctctcggaaatcacccacaagcgccgcctgtcggct
cttgggcctggtggtctcacccgcgagcgcgctggcttcgaagtccgtgacgtgcacccg
acgcactatggccgtatctgcccgatcgagacgccggaaggcccgaatatcggtctgatc
aactccctggcgacctttgcccgcgtcaacaagtacggcttcatcgagaccccgtaccgc
aagatcgtggaaggccacgtgaccgacgaggtcgtgtacctgtcggccatggaagaggcc
aagcactatgtcggccaggcgaacgccaagctcaacgagaagggcgagttcgtggacgac
ctggtcctggcccgtcacgccggcgacaatggtctgacgcccaaggaactcgtcgacctg
atggacgtgagccccaagcagatcgtgtctgtggctgccgcgctcattccgttcctcgag
aacgacgacgccaaccgcgccctgatgggctcgaacatgcagcgtcaggctgtgccgctg
ctgcgtgccgaggccccgttcgtgggcacgggcatggagccggtcgtggcccgtgactcg
ggcgccgcgatcgtcgccaagcgcaagggcatcgtcgaccaggtggatgcgacccgtatc
gttatccgcgccaccgaggagacggatgcctccaagtcgggcgtggacatctacaacctg
atgaagttccagcgttcgaaccagtcgacctgcatcaaccagcgtccgctggtggttgtg
ggcgaccatgtcgaagccggcgacatcgtggctgacggtccctccaccgaactgggcgat
ctggccctgggccgcaacgtgctcgtcgcgttcatgccctggaacggctacaacttcgaa
gactcgatcctgctgagcgaaaagatcgccatgcaggacgtcttcacctcgatccacatc
gaggaatacgaagtgatggcccgcgataccaagctcggccccgaggaaatcacgcgcgac
attccgaacgtgtcggaagaggcgctcaagaacctcgacgaagccggtatcgtccatatc
ggtgccgaagtcggtcctggcgacatcctggtcggcaagatcacgccgaagggcgaaagc
ccgatgacgccggaagaaaagctcctgcgcgccatcttcggcgagaaggcttcggacgtt
cgcgatacctcgctccgcgtgccgccgggcgatgctggtactgtcgttgaagtgcgcgtg
ttcaaccgccacggcatcgacaaggacgagcgcgccatggccatcgagcgcgaggaaatc
gagcgcctggccaaggaccgcgacgacgaacagtcgatcctggaccgcaacgtctatgcg
cgtctgaaggaaatgctgttcggcaaggcggcgacggctggcccgaagggctatgtcgtg
ggcaccaagctcaacgaccagatgttcgaggctcagccccgttcgaagtggtggcagttc
gcggtcgaagacgacaaggtcatgaccgagatggaagctcttcatgcccagtatgaagag
agccgtcgtctgctcgagcagcgtttcatcgacaaggtcgacaagctccagcgcggtgac
gaacttccgccgggcgtgatgaagatggtcaaggtcttcgttgcgaccaagcgcaagatc
cagccgggcgacaagatggccggccgtcacggcaacaagggcgtggtgtccaagatcacc
ccgctcgaggatatgccgtacctggaagacggtactcccgtcgacatcgtgctcaatccg
ctgggcgtgccctcccgcatgaacgtgggccagattctggaaacccacctcggctgggcc
tgcgccggcatgggcaagaagatcgacgagatggtccggatctaccagcagaacggggac
ctcaagcccttgaagcgggagatcggcgacctattttcggatgacgactacgtctcgaac
ctcgacgacgacagtgtcgttcgtctgggcgagcacctttcgaagggtgtctcgatcgcg
acgccggtgttcgatggcgccaaggaagccaacatcgtcgaaatgcttgaaagggcaggg
ctcaagtcctccggccagtcgaccgtctttgacggccgtaccggcgagcaattcgaccgt
caggtgaccgtgggctacatctacatgctcaagctgcaccatctggtggacgacaagatc
cacgcccgctcgatcggcccgtactcgctggttacccagcagccgctcggtggtaaggcg
cagttcggcggtcagcgcttcggcgaaatggaggtgtgggcactcgaggcatacggtgcc
gcgtacaccctccaggaaatgctgacgatcaagtcggacgacgtggccggccgcaccaag
gtctacgaggccatcgtgcgcggcgacgacaccttcgaagcgggcattccggaaagcttc
aacgtgctggtcaaggaaatccggtcgctcgggctcaatgtcgagctcgatacggccgag
gctcccgggaccgagcaggccgaagcggagctggagcctcctcaggccgcggcggaataa
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integrated database retrieval system
