Devosia sp. H5989: XM25_11870
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Entry
XM25_11870 CDS
T04003
Symbol
RpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
deq
Devosia sp. H5989
Pathway
deq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XM25_11870 (RpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deq03021
]
XM25_11870 (RpoD)
Transcription machinery [BR:
deq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XM25_11870 (RpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF16
FUSC
Motif
Other DBs
NCBI-ProteinID:
AKR56478
LinkDB
All DBs
Position
complement(2432115..2434172)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKAASANKKETEKPEAGSAPETPDTSPLDLSDAAVKKLIKVAKKRGYVTYEEVNSVLP
SEEVTSEQIEDIMAMFSDMGINVVDEDEVEEAEPDSDEESTEVAERTGTAVASKSNTREG
SDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDQ
LAQGEILLRDIIDLEATYAGPDAKQAAPVVQAEVEKAPAAEAKPAKEAPKKRASSGDDDD
DYVPEEPQAPQDPVEEEDDDFENSLSLSAMEAELKPQVVETFDRIAEAYGKMRLLQDQHA
EDRAALKTSSAADVKKVDTLRGEVIADVKSLSLNASRIESLVEQLYDINKRLVRLEGRLL
RLAESYGIKRDEFLQAYYGSEVDPTWTEAVGGRDGKGWAEFIRRELDTVNEIRGEISTLA
TETGLDITEYRRIVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIPDVNA
IQPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggccactaaggcagcaagcgcgaacaagaaagaaaccgagaagccggaagccgggtcc
gcccccgagactccggatacctcgccactcgacctttccgatgccgcggtcaagaagctg
atcaaggtcgccaagaaacgcggctatgtcacctatgaggaagtgaactcggttctgcca
tccgaggaagtcacgtccgaacagatcgaagacatcatggccatgttctcggacatgggc
atcaacgtcgtcgacgaggatgaggtcgaagaggccgagcccgattccgacgaagagagc
accgaagtcgccgaacgcacggggacggcggtcgccagcaagtccaacacccgcgaaggc
agcgaccgcaccgacgatccggtgcgcatgtacctgcgcgagatgggctcggtggagctg
ctcagccgcgagggcgaaatcgccatcgccaagcgcatcgaggccggccgcgagaccatg
atcgcgggcctgtgcgaaagcccgctgaccttccaggccatcatcatctggcgcgaccag
ctcgcccagggcgaaatcctgctgcgcgacatcatcgacctggaagccacctatgccggc
cccgacgccaagcaggcggccccggtggtgcaggccgaggtcgagaaggctccggctgcc
gaggccaagcctgccaaggaggcgcccaagaagcgcgccagctccggcgacgacgatgac
gactacgttcccgaggagccgcaggcgcctcaggatccggtggaagaggaagacgacgac
ttcgagaattcgctgtcgctctcggccatggaagccgagcttaagccgcaggtggtggag
acgttcgaccgtatcgccgaagcctatggcaagatgcgcctgctccaggaccagcacgcc
gaggaccgcgccgcgctcaagacctccagcgccgccgacgtcaagaaggtggatacgctg
cgcggcgaggtgatcgcggacgtcaagtcgctctcgctcaatgccagccgcatcgagagc
ctcgtcgagcagctctacgacatcaacaagcgcctggtgcgcctggaaggtcgcctgctg
cgcctggccgaaagctacggcatcaagcgcgacgagttcctgcaggcctattacggctcg
gaagtcgacccgacctggacggaagccgtgggcggccgcgatggcaagggctgggccgag
ttcatccggcgcgagctcgataccgtcaacgaaatccgcggcgagatctccacgcttgcg
accgagacgggcctggacatcaccgaatatcgccgcatcgtccacaaggtgcagaagggc
gaacgcgaggccgccatcgccaagaaggaaatggtggaagccaaccttcgcctggtgatc
tcgatcgccaagaagtacacgaaccgcggcctgcagttcctggacctgatccaggagggc
aatatcggcctgatgaaggcggtcgacaagttcgagtaccggcgcggctacaagttctcg
acctatgcgacctggtggatccgccaggcgatcacccgctcgatcgccgatcaggcgcgc
accatccgtattccggtgcacatgatcgagacgatcaacaagatcgtgcgcacgagccgc
cagatgctccacgagatcggccgcgagccgacgcccgaggagctgagcgaaaagctgcag
atgccgctcgacaaggtccgcaaggtcctcaagatcgccaaggagccgatctcgctcgag
acgccgatcggcgacgaggaagattcgaacctgggcgatttcatcccggacgtgaacgcc
atccagccgatcgatgcggcgatccagtcgaacctgcgcgagacgacgacccgcgtgctg
gcctcgctgaccccgcgcgaggaacgcgtgctgcgcatgcgcttcggcatcggcatgaac
acggaccatacgctggaggaagtgggccagcagttctcggtgacgcgcgaacgtatccgc
cagatcgaagccaaggcgctgcgcaagctcaagcacccgagccggtcgcgcaagctgcgc
agcttcctggataactag
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integrated database retrieval system
