Devosia sp. H5989: XM25_12145
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Entry
XM25_12145 CDS
T04003
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
deq
Devosia sp. H5989
Pathway
deq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XM25_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
deq03400
]
XM25_12145
DNA repair and recombination proteins [BR:
deq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XM25_12145
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XM25_12145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
AAA_22
AAA_30
AAA_16
AAA_5
eIF3_p135
Motif
Other DBs
NCBI-ProteinID:
AKR56530
LinkDB
All DBs
Position
2485852..2488212
Genome browser
AA seq
786 aa
AA seq
DB search
MDRPTNLPGLEEGMQAGFNHMPSGAARDRMTARDISREAAKNPEVLGKLREALDTAKAKS
KKRGSSLEGAATVGISATVKALEDIILHGRKEVEGSAPWVPHRPERPEKREGGIPFKLVT
DYEPRGDQPTAIAELIEGIENGETDQVLLGVTGSGKTFTAAQVIARTNRPALILAPNKTL
AAQLYGEFKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKESTINEQIDRMRHSATRA
LLERDDVIIVASVSCIYGIGSVEDYTAMTIDVQKGEKIDQRELLAKLVALQYKRGDTGFV
RGTFRVRGDTIELFPAHYEDAAWRITLFGNEVEAIAEFDPLTGKKSSDLTFIRVFANSHH
VTPRTTMNQAIKLIKQELAARLQELNGAGRFLEAQRLEQRTLFDLEMMEATGSCAGIENY
SRYFSGRRPGEPPPTLFEYLPDNALVFVDESHVTIGQLGAMYRGDLRRKATLAEYGFRLP
SCMDNRPLRFEEWNAMRPQSVYVSATPGSWEMEQTGGVFAEQVIRPTGLIDPPVEIRPAK
SQVDDVVDEIRQTSKNGYRTLVTVLTKKMAEDLTEYMHEQGIRVRYMHSDIDTIERIEII
RDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGR
VILYADNTTGSMERALAETNRRREKQMAYNEANGITPQSVRSNILDIVDSVAERDHVTVS
IGKGKDGKEQVQVGANLAAVIKDLEAQMREAATNLEFERAARLRDEIKRLREMELDTLEG
ADLAAD
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
gtggatcgccccaccaacctgccgggcctcgaggaaggcatgcaggccggcttcaaccac
atgccctccggcgccgcccgcgaccgcatgaccgcgcgcgacatttcccgcgaggccgcc
aagaacccggaagtcctcggcaagctgcgcgaagcgctcgataccgccaaggccaagtcg
aagaagcgtggctcgtccctcgaaggcgccgccaccgtcggcatcagcgccacagtcaag
gcgctcgaagacatcatcctccatggccgcaaggaagtggaaggctccgccccctgggtt
ccccatcgacccgagcgcccggaaaagcgcgagggcggcatccccttcaagctcgtcacc
gactatgaaccgcgcggcgaccagcccaccgccattgctgagctcatcgaaggcatcgag
aacggcgagaccgatcaggtactgctcggcgtcaccggctcgggcaagacctttaccgcc
gcccaggtcatcgcccgcaccaaccgcccggccctcatcctcgcccccaacaagacgctg
gccgcccagctctatggcgagttcaagtccttcttcccggagaacgcggtcgagtatttc
gtctcctattacgactattaccagcccgaggcctacgtcccgcgcaccgacacctatatc
gagaaggaatccaccatcaacgagcagatcgaccggatgcgccactcggccacccgcgcc
ctgctcgaacgcgacgacgtcatcatcgtcgcctcggtctcctgcatctacggtatcggc
tcggtcgaagactacacggccatgaccatcgacgtgcagaagggcgaaaagatcgaccag
cgcgagctcctcgccaagctggtcgccctccagtacaagcgcggcgacaccggcttcgtg
cgcggcaccttccgggttcgcggcgacaccatcgaactcttcccggcccactatgaagac
gccgcctggcgcatcaccctcttcggcaacgaggtggaggccatcgccgagttcgatccc
ttgaccggcaagaagtcgtccgacctcaccttcatccgcgtcttcgccaacagccaccac
gtgacgccgcgcacgacgatgaaccaggccatcaagctcatcaagcaggagcttgccgcc
cgcctccaggagctcaacggcgccggtcgcttcctcgaggcccagcgcctcgagcagcgc
acgctcttcgatctcgagatgatggaagccaccggctcctgcgccggcatcgagaactat
tcccgctacttctccggtcgtcgccccggcgagccgccgccgacgctcttcgaatacctg
cccgacaacgccctggtgttcgtggacgaatcccacgtcaccattggccagctcggcgcc
atgtatcgcggcgacctgcgccgcaaggccacgctcgccgaatacggcttccgcctcccc
tcctgcatggacaaccgtccgctgcgcttcgaggagtggaacgccatgcgcccgcaatcg
gtctatgtctcggccacgcccggctcgtgggagatggagcagaccggcggcgtcttcgcc
gagcaggtcatccgccccaccggcctcatcgacccgcccgtcgagatccgccccgccaag
agccaggtggacgacgtcgtcgacgagatccgccagacctccaagaacggctatcgcacc
ctcgtcaccgtcctcaccaagaagatggccgaggacctgaccgaatacatgcatgagcag
ggcatccgcgtgcgctacatgcactcggacatcgacaccatcgagcgcatcgagatcatc
cgcgatctgcgcctgggcgccttcgacgtcctggtcggcatcaatctcttgcgcgaaggc
ctcgacatccccgaatgcgggctcgtcgccatcctcgacgccgacaaggaagggttcctg
cgcagcgaaacctcgctcatccagaccatcggccgcgccgcccgaaacgtcgatggccgc
gttatcctctatgccgacaacaccaccggctcgatggaacgcgcgctggccgaaaccaac
cgccgccgcgaaaagcagatggcctacaacgaggccaacggcatcaccccgcaatcggtg
cgctccaacatcctcgacatcgtcgattccgtcgccgagcgcgaccacgtcaccgtttcc
atcggcaagggcaaggacggcaaggaacaggtccaggtcggcgccaacctcgccgccgtc
atcaaggacctcgaagcccagatgcgcgaggccgccaccaacctcgaattcgaacgcgcc
gcacgcctccgcgacgaaatcaagcgcctgcgcgaaatggaactcgacaccctcgaaggc
gccgacctcgccgccgactga
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