Devosia sp. H5989: XM25_12695
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Entry
XM25_12695 CDS
T04003
Symbol
RhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
deq
Devosia sp. H5989
Pathway
deq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XM25_12695 (RhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deq03019
]
XM25_12695 (RhlE)
Enzymes [BR:
deq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XM25_12695 (RhlE)
Messenger RNA biogenesis [BR:
deq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XM25_12695 (RhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AKR56639
LinkDB
All DBs
Position
complement(2595783..2597240)
Genome browser
AA seq
485 aa
AA seq
DB search
MTATFESLGLSGPLLASLAKAGFDTPTKIQAEAIPHQLKGKDILGIAQTGSGKTAAFGLP
ILAGLQALPGRPRPMTARALILVPTRELAVQIDEALRKMAGSMRLTTVLVLGGVSRYNQV
QKLAKGVDICIATPGRMKDLVDDDKVWLSETRWLILDEADRMLDMGFIGPVKEIASKISW
KRQTALFSATMAPEISKLAEGLLREPVRVEATVPGTTVAEIEQRVIMAGSKAKREELNKL
LGDAALERVIVFTRTKHGADRVTKNLSIDGFEAAAIHGNKSQNARQAALKGFSSGRVRIL
VATDIAARGIDVPGITHVINYDLPDDAENYVHRIGRTGRNGASGVAITLCDGTEKGQLRD
IEKLIRKSLPVSGDLSIVEVDPPKKAKGNNGRKPNPNAGAPRARKPAGKTLAGFNDGTRH
QEPAPHRAHGDKKRKDGEAARTRNGQPGGKPAAAKQGKPRWNKNQKDAGRARRAEGGRGR
GERVA
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgacagcaacttttgaatccctcggactttcgggcccgctgcttgcttcgctcgcaaaa
gccgggttcgacactcccaccaagatccaggccgaggctatcccccaccagctcaagggc
aaggacatcctgggcatcgcccagaccggctcgggcaagacggcggcgtttggcctgccg
atcctggccggcctgcaggcgctgcccggccgcccgcgtccgatgacggcgcgcgcgctc
atcctcgttccgacgcgcgaactcgccgtccagatcgacgaagcgctgcgcaagatggcc
ggcagcatgcggctcaccaccgtgctcgtgctaggtggcgtgtcgcgctacaatcaggtc
cagaagctggccaagggcgtcgatatctgcatcgccacgcccggccgcatgaaggacctc
gtcgatgacgacaaggtgtggttgagcgaaacccgctggctgatcctggacgaggctgac
cgcatgctcgacatgggcttcattggcccggtcaaggaaatcgcttccaagatcagctgg
aagcgccagacggccctgttctcggccaccatggcgcccgaaatctccaagcttgcagaa
gggttgctgcgcgagccggttcgtgtcgaggccaccgtgccgggcaccaccgtcgccgag
atcgagcagcgcgtcatcatggcgggctccaaggcgaagcgcgaagagctcaacaagctt
ctcggggacgccgcgctcgagcgcgtcatcgtcttcacccgtaccaagcacggtgccgac
cgcgtcaccaagaacctgtcgatcgatgggttcgaggccgcggccattcacggtaacaag
agccagaacgcccgccaggcagctctcaagggcttttcgtccggccgcgtgcgcatcctt
gtcgccaccgatatcgcggcgcgtggcatcgacgttccaggcattacgcacgtcatcaac
tacgacctgcccgatgatgccgagaactatgtgcaccgcattggccggaccgggcgcaat
ggcgcttcgggcgtggccatcacgctttgcgatggcaccgaaaagggccagctgcgcgac
atcgagaagctgatccgcaagagcctgccggtttccggcgatctttcgatcgtggaagtc
gatccgcccaagaaggccaagggcaataacgggcgcaagcccaaccccaatgccggggcc
ccccgtgcgcgcaagccggccggcaagaccctggccggtttcaacgatggcacgcgccat
caggaaccggcgccgcatcgcgcccatggcgacaagaagcgcaaggacggcgaggctgcc
cgtacccgcaacggccagcccggtggcaagccggcggcagccaagcagggcaagccacgc
tggaacaagaaccagaaggatgccggtcgcgcgcgtcgggccgagggtggtcgtggccgt
ggcgagcgcgtcgcctga
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