KEGG   Devosia sp. H5989: XM25_17635
Entry
XM25_17635        CDS       T04003                                 
Symbol
Rho
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
deq  Devosia sp. H5989
Pathway
deq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:deq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XM25_17635 (Rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:deq03021]
    XM25_17635 (Rho)
   03019 Messenger RNA biogenesis [BR:deq03019]
    XM25_17635 (Rho)
Transcription machinery [BR:deq03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     XM25_17635 (Rho)
Messenger RNA biogenesis [BR:deq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     XM25_17635 (Rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 S1CSD-TOTE-2 ATPase_2 AAA Fungal_virus_P2_C DUF6360 AAA_14 Spore_III_AA DnaB_C
Other DBs
NCBI-ProteinID: AKR57569
LinkDB
Position
complement(3586470..3587735)
AA seq 421 aa
MQNLKLSELKAKSPAELLAFAEEHEVENASTMRKQELMFAILKELAAKEVDITGEGVVEV
LPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGERYFALLKVN
TINFEDPEKVRHKINFDNLTPLYPDERLRMELPDPTIKDRSARVLDLVAPLGKGQRALIV
APPRTGKTVLLQNIAQSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAS
RHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEDGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRIFPA
LDITKSGTRKEELLVEPDILKKMYVLRRILSPMGTIDAMEFLMDKVRQTKTNGEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcagaatctcaagctcagcgagcttaaggccaaatccccggcagaattgcttgcattc
gccgaggagcacgaggtcgaaaacgcctcgaccatgcgcaagcaggaactgatgttcgcc
atcctcaaggaactggcggccaaggaagtcgacatcacgggcgagggcgtggtcgaagtc
cttccggacggtttcggtttccttcgttcccccgatgccaactaccttcccggtcccgac
gacatctatgtaagcccctcccagatccggcgcttctcgctgcgtaccggcgacacggtc
gagggccagatccggtcccccaaggaaggcgagcgctatttcgcgctgctcaaggtcaac
accatcaatttcgaggaccccgaaaaggtccgccacaagatcaacttcgataacctgacc
ccgctctatcccgacgagcggctgcgcatggaactgcccgatcccaccatcaaggatcgt
tcggcccgcgtgctcgacctggttgctccgctcggcaaggggcagcgcgccctcatcgtt
gcgccgccgcgtactggtaagaccgtactgttgcagaatatcgcacagtcgatcgcgacc
aatcaccccgagtgctatctcatcgtgctcctcatcgacgagcgtcccgaagaagtgacg
gacatgcagcggtcggtgaagggcgaggtgatttcctcgaccttcgatgagccggccagc
cgccacgtccaggtcgccgagatggtgatcgagaaggccaagcgcctggtcgaacacaag
cgcgacgtggtgatcctgctcgattcgatcactcgcctcggccgcgcctacaacaccgtg
gtgccaagctcgggcaaggtgctgaccggtggtgtggatgccaacgccctgcagcgcccc
aagcgcttcttcggcgcggcgcgcaatatcgaggatggcggctcgctcaccatcatctcg
acggccctcatcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggc
accggtaactcggaaatcatcctcgaccgcaaggtcgccgacaagcgcatcttcccggcg
ctcgacatcaccaagtcgggtacccgcaaggaagagctgctggtcgagcccgatatcttg
aagaagatgtacgtgctccgtcgcatcctctcgcccatgggcacgatcgacgccatggaa
ttcctgatggacaaggtccgccagaccaagaccaacggcgaattcttcgagtcgatgaac
acctaa

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