Drosophila erecta: 6542475
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Entry
6542475 CDS
T01060
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
der
Drosophila erecta
Pathway
der03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
der00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6542475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
der03019
]
6542475
03041 Spliceosome [BR:
der03041
]
6542475
03009 Ribosome biogenesis [BR:
der03009
]
6542475
03016 Transfer RNA biogenesis [BR:
der03016
]
6542475
Enzymes [BR:
der01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6542475
Messenger RNA biogenesis [BR:
der03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
6542475
Spliceosome [BR:
der03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
6542475
Complex C
U4/U6.U5 tri-SnRNP related factors
6542475
Ribosome biogenesis [BR:
der03009
]
Eukaryotic type
Pre-60S particles
Helicases
6542475
Transfer RNA biogenesis [BR:
der03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
6542475
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
6542475
NCBI-ProteinID:
XP_001968990
UniProt:
B3N611
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MDIEELFDCFDEVSPAMPPPVVNQKEKPTGSGGAQKGSKRQAEDTASAQSSKGAEGADKG
DDNEEPTKRLRQEESIVAVDDDDADDEPTRTLDLDDSAALEALRTRIVTHLLDSPKSCTH
EVAAHPDQEYIPLQPFSGVPAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAE
YAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLIMTTEIL
RNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQF
AEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLAN
AGEAGKGDQKGRNGGIKGTNAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAK
LDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIE
ILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRG
LDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERS
FYQFQNQAALPGLHDQVEQKTLELNKLTIKDEHNIASYHHIRSQLDQHGKQFRQWITKPQ
YLLPFLQPGRLVKVAAGSQEYDWGIVLNFKKQDQSRKNPLKCEPSVTIDVLLHVSEAAAK
TGDTEPCKPNERGCMEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFP
MGPPVLNPIDDMNIKEREFRDIVNTIAQFEARLEEHPLHKSPELERIYRRYQDKVKLQSQ
LQDLKAELKAARSLLQMEELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEM
IFNGVFNELTAPQAVALLSCFVCDEKSSESVKSATELSGPLRSMQDLARRIAKVSTECKL
DLDADTYVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQMCQAS
KTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggatatagaagagctattcgactgctttgatgaggtgtcgccggcgatgccgccaccg
gtagttaaccagaaggagaagccaacgggaagcggtggcgcccaaaagggaagcaaacgg
caagcggaggacaccgcttccgctcaatcctccaaaggagcggaaggagctgacaaagga
gacgacaatgaggagcccaccaagcgtctgaggcaggaggagtccattgttgcagtggat
gacgacgatgcagatgacgagcccactcgtaccctcgatttggatgattctgcggctctg
gaggccctgcgcactaggattgtgacccacttattggactctcccaagtcatgcacccac
gaggttgccgcccatcctgaccaggagtacatacccctacagccgttcagcggcgtgccg
gcgaaggaataccccttcgtgctcgatccgttccagcgccaggcgattctgtgcattgac
aacagccagagtgtcctggtttccgcccacacgtcagccggaaagaccgtggtggcggag
tatgccatagctaaatcattggccgccaagcagcgggttatatacaccactcccataaag
gctctgtccaaccagaagttccgcgaattcaccgacgagtttaaggacgtgggactggtc
accggtgatgtcaccataaatccatcggcctcctgtttgatcatgaccaccgagattcta
cggaacatgttgtaccgcggcagcgagatcatgcgcgaggtgggctgggtgatcttcgat
gagattcactacatgcgcgacaaggagcgcggcgtcgtttgggaggaaacgctcatcctt
ctgccagacaatgtgcggtatgtgttcctttcggccaccattcccaatgctcggcagttc
gcggagtgggtctgccacctgcacaagcagccatgtcacgttgtctacaccgactaccgc
cccactccattgcaacactacatcttcccggccggaggcgatggcatccatcttatcgtc
gacgaaaaggggcagttcaaggaggacaactttaccactgcaatggcagtgctggccaat
gcaggtgaggctgggaagggcgatcagaaagggcggaatggtggcattaaaggaactaat
gccggacaaacaaatatctttaaaatcgtcaagatgattatggagcgcaattttgcaccg
gtcatcattttctcgttcagcaagaaggactgcgagatctatgccatgcagatggccaag
ctggacttcaacactccggacgaaaagaaactagtcgacgaggtgttcaacaatgccatg
gacgtgctcacggaggaggatcgtcggctgccccaggtggaaaacgtattgccgctgttg
cgtcgcggcattggcatccatcatggtggtctgctgccaattctgaaggagaccatagag
attctgttcggggaaggtctgatcaaggccttgttcgccaccgaaacctttgccatgggc
cttaacatgccggctagaactgtgctatttacggctccgcgtaagttcgatggcaaggac
ttccgatggatcagctctggcgagtacatccaaatggcgggacgtgccggtcgacgtgga
ttggatgacaagggcatcgtcattctcatgatcgacgaaaaagtttcgccggccgttggt
cgtgacattgtccagggcaaggcagatcccatcaattcggccttccatcttacatacaat
atggtgctaaatctgcttcgcgtggaggaaatcaatccggagtacatgctggagcgcagt
ttctatcaattccagaatcaagctgccctgcccggcctgcatgaccaggtggagcagaag
acgctggagctgaataagctgactatcaaggacgagcacaacattgcttcctaccatcac
atacgctcccagctggatcagcacggcaagcagtttcgtcagtggataacgaagccgcaa
tacctcttgccgtttctgcagcctggcaggttggtgaaggtggccgccggctcccaggag
tacgactgggggattgtgttgaactttaagaaacaagaccagagccgcaagaatccttta
aagtgtgagcccagcgtcaccattgatgtgctactgcacgtaagtgaagcggccgcaaaa
accggcgacacggagccatgcaaaccgaacgagcgtggatgcatggaggtggtaccggtg
gcccacaccctcatcacccagatcagctcaattcgcgtgtacttccccaacgatctacgc
agtgctgacaatcggcgagccgtgctgaagactatccaggaggcgaagaaacgattcccc
atgggaccacccgtcctcaatcccatcgacgacatgaacatcaaggaacgagagttccgc
gatattgtcaataccattgcccaatttgaggcgcgtctggaggagcatccgctacacaag
tcaccggaattggagcgcatctaccggcgctaccaggacaaggtgaagctgcaatcgcaa
ctgcaagacctgaaggccgagctgaaggctgcccgcagtctgctgcagatggaggaactg
aagcaccgcaagcgtgtccttcggcgcatgggctactgcaagcccggcgacgtcattgag
tttaagggtcgcgttgcctgcgaactgagctcggcggatgaactcctcatgaccgagatg
atctttaacggagtatttaacgagcttaccgcgccgcaagcggtggctctgctttcctgc
tttgtttgcgacgagaagtccagcgagtcggtgaagagcgccacggagctatcgggacca
ctgcgctcgatgcaggatctggcgcggcgcattgccaaggtgtccacggaatgcaagctc
gatctggacgccgatacctatgtggacaagtttaagcccttcctaatggacgtggtgctg
gcgtggtgcaagggctccagcttccttgcggtctgcaagatgaccgacatctttgaaggc
tccatcatccgctgcatgaggcgactggaggagctgctgcgccagatgtgtcaggcctcg
aaaaccattggcaacactgacctggaaaacaagttctccgaaggaatacggttgctcaag
cgtgacattgtgtttgccgcgtcgttgtatctgtaa
DBGET
integrated database retrieval system
