Drosophila erecta: 6548086
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Entry
6548086 CDS
T01060
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
der
Drosophila erecta
Pathway
der03440
Homologous recombination
der03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
der00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
6548086
03450 Non-homologous end-joining
6548086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
der03032
]
6548086
03400 DNA repair and recombination proteins [BR:
der03400
]
6548086
DNA replication proteins [BR:
der03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
6548086
DNA repair and recombination proteins [BR:
der03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
6548086
BRCA1-C complex
6548086
NHEJ (non-homologous end-joining)
MRX complex
6548086
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_29
AAA_16
ABC_tran
AAA_22
AAA_5
TFA2_Winged_2
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
6548086
NCBI-ProteinID:
XP_001975202
UniProt:
B3NNP5
LinkDB
All DBs
Position
Unknown
AA seq
1318 aa
AA seq
DB search
MSSIESLSIQGIRSFGTYAEDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTGECPPG
SDRGKSFVHDPKIFGLNEVLAQIKMQVRDRRGAQVSICRTMKVSKKRNKMSFETMDSTIN
FLTGAGQSKREKQDSLSGRSVDIDVAISDFMGVSKAIINNVLFCHQEDSSWPLDESKKLK
EKFDAIFGITEYNKALDKIIKLRKDAMEELKLKESKMKHVAYLKQEMEVKTLNLQMAQRK
CDAIKLQCSECEEEMKPIEARLMEIRNVEFEIGKYQAQKVEMDTKHKNCKDQISTLTSKI
KTPFRGTLAELDQEINNFDQRMQEMHQKRTEVEGDLSQIRKSRVSEQEKLGTQDRKHCLA
KQRHQSELACQAQLLKRVKDFCREVHITINSDLVEHPEKMGEVLQDIEAMLITKHCEITE
IVEQNEKADRSRQVKIDELRIELTKSEQSVTAQEKQRESSKRESETLGKDIKKIETSMQD
LKKLEKEITEVNELYETATKDIDQQAIKDAIARKKASIAENQIQFKKLDEQLTFLGSMAK
LVAECSLKQKELDKKNQEVHRVRSRHSDHFGKFFKEPITCNYRRSMQGVYDKLRREIQDL
NEKANSQKLKEQSYEIKRKNLIGDISRTEKELKESEELIFQKCRSTPYDDLLERSKTAIS
KLQFDHGALKSSEALYKKYIQKMDEEPCCPLCHHNMTSDEACDLTSELTDEIQKLPDNIT
RAEKALKAEQIKYENLLQIKPIIIKVKDLKESLPQKKEELKKVEELLGESVSEYETLLAL
IGEPTHNMELANSMMGDMSLLDEALKDSARLTKDLDQQKGKLPASYDSSVSMDALQAEKN
QVSKELETERKELDSAQNAFQQQMDALNRLREKKNSLKDRQIHLREGLQSLPQLKERLEK
LTSFLATVASEINELKAKIQPLKLNLRAAIDEKERLKKIESDKLAQLNSKYNSYKSTDQD
IQRLNKEAEDYAKLDLRNEIKKLDEIIRASKDQLRKLEIEISSKSDELDTIKTECSNQLT
VERDLKDNRELKQLEDKESKLRESCQTLDKQLGNLDFHSVSKEKVELTNQRDKATVRKGE
LLGQLGEINNQVKKLQREIDEPRFKESLKNFRKANYEIEVTRLCIEDLGQYRLALEWALI
QFHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSADASADRRKTYNYRVVQSKNYS
EIEMRGRCSAGQRVLASLIIRLALAETFSSNCGVLALDEPTTNLDRANINSLCEALNCIV
EERQSQSNFMLIIITHDENFVSSLGKITSYHRVFRNDECKSVIRRVEAGPSKKALIDQ
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaattgaatcgctgtccatccagggaatccggagtttcggcacctatgccgag
gatcttcaaagcataaagttttcatcaccggttaccctgattctgggcgagaatgggtgc
ggaaagacgactgtggtagagtgcctcaagtacgccttaaccggcgagtgtccgccgggc
agtgatcgcggcaagagtttcgtccacgaccccaagatctttggactgaacgaggtgttg
gcgcagatcaagatgcaggtgagggacaggcggggcgcccaggtgtccatatgccgcacc
atgaaggtgtccaagaagcgcaacaaaatgtccttcgaaacaatggactccacgatcaac
ttcctgaccggcgccggacagtcgaagcgcgaaaagcaggactccctgagcgggcgctcc
gtggacatcgatgtggccatctcggactttatgggtgtctccaaggctattatcaacaat
gtcctgttttgccatcaggaggactccagttggccgctagacgagtcaaagaagttaaag
gaaaaattcgatgccatattcggcatcaccgagtacaataaggccctggataaaatcata
aagcttcgcaaggatgccatggaggagctaaaattaaaggagtctaaaatgaagcatgtg
gcctaccttaagcaggaaatggaggttaaaactttgaatctgcaaatggcacagaggaaa
tgcgacgcaattaagttgcaatgtagcgagtgcgaggaggaaatgaagccgattgaggcc
aggctgatggaaatacgaaatgtagagttcgaaattggcaaataccaagcgcagaaagtc
gaaatggacaccaagcacaaaaactgcaaggatcaaatatccactttaaccagtaagatc
aagaccccctttagaggtactcttgctgaattggatcaagagatcaataactttgatcag
cgcatgcaggagatgcatcaaaaacgcaccgaggtggagggggatttgtcccagattagg
aagtccagagtctctgagcaagaaaagttgggcacccaggaccgaaagcattgtctggct
aaacagcggcatcagagcgagctggcttgtcaagcacagcttctgaagcgggttaaggac
ttctgccgggaagtccatataaccatcaatagtgatctggtggagcatcccgaaaagatg
ggggaagttcttcaggatatcgaggctatgttaataaccaagcactgtgaaataacagag
atcgttgagcaaaacgagaaggctgatcgtagtcggcaagtcaagattgacgagctccgc
attgagctgaccaagtcggagcaaagtgtgaccgcgcaggagaagcaacgggagtccagc
aaacgagagagtgaaactcttggaaaggacataaaaaaaatcgaaacatccatgcaggat
ttgaaaaagcttgagaaagaaataaccgaggtaaatgagttgtatgagaccgctaccaaa
gacattgaccagcaggctataaaagatgcaattgccagaaagaaagccagtattgctgag
aatcagattcagtttaagaagctggacgaacagttgactttcttagggtccatggccaag
ctagttgccgagtgttctctgaagcaaaaggagcttgataaaaagaaccaagaggtacat
cgcgtgcgcagccgacactctgatcattttgggaagttcttcaaggaacctattacctgc
aattaccgccgatcgatgcaaggagtctacgacaaacttcgtcgcgagattcaagatctt
aacgagaaggcaaactcgcagaaactaaaagaacagtcatacgaaattaagcgtaagaac
ctcatcggcgatatttcgcgaacggaaaaggagttgaaggagagcgaggagttaatattt
caaaagtgtcggtcaactccgtatgatgatctgctggagcgaagtaaaacggctatttcc
aagttgcagttcgaccacggcgcccttaagtcgtccgaggctctttataagaagtatata
cagaaaatggatgaagagccatgttgcccattatgccaccacaacatgactagtgatgag
gcttgcgacttgaccagcgagctaactgatgagatccaaaagttgcccgataatatcacc
agagctgagaaagccctaaaggcggagcagataaaatatgagaacttattgcagattaaa
ccgatcattattaaggtcaaggatcttaaggaatccttgccccaaaagaaggaggaactg
aaaaaagtcgaggagctcctaggggagagcgtcagcgaatatgaaactttactcgcttta
attggcgagccaacgcataatatggagttggcgaattccatgatgggtgatatgtctcta
ttagacgaagctttaaaagattctgcacggcttacaaaagatctggatcagcagaaggga
aagttaccagcttcctatgattcaagtgtatccatggatgctctgcaggcggagaagaat
caggtttcaaaagagttggaaacggaacgtaaggagttagactccgctcagaatgcattc
cagcagcaaatggatgcccttaaccgtttgcgcgaaaagaagaatagtttaaaagatagg
caaatacatctgcgagagggtctgcaaagcttgccacagttaaaggagcgtttggagaag
ctcactagtttccttgcaacagtagcctctgaaatcaatgaacttaaggccaaaatccaa
cctcttaagctgaatctacgagcagcaatagacgaaaaagagcgcttgaaaaaaatcgaa
agtgacaagttagctcagctgaattccaagtataactcctacaaaagcacagatcaggac
atacaacgattgaacaaagaagccgaggactacgccaaattggatcttcgaaatgaaatc
aaaaagcttgatgaaatcataagggcctccaaagatcagttaaggaaattggaaatcgaa
atctcttcgaaatctgacgaactcgatacaattaaaacagagtgttccaatcagctgacc
gttgaacgggatttgaaggataaccgcgagctgaaacagctcgaagataaagaatccaag
ctacgagaaagttgccagacgctggacaagcaactgggtaacctcgactttcacagcgtc
agcaaggagaaagtggaactaactaaccaaagggataaagccacagtgcgtaagggcgaa
ctgctgggccagctaggcgagattaacaaccaggtgaagaagttgcagcgcgaaatcgat
gagcctagatttaaggagtctttaaagaacttccggaaggccaattacgagatagaggtc
actcgtctctgcattgaggacttgggccaatatcgtttagcgttggagtgggcactgatc
cagtttcactctgaaaaaatggagatgattaaccgtctgatacgcgagtactggcgtaag
atatatcgcggaaatgacattgactatattcaggtgaaaactgatgaggtaagtgcggat
gcttcggcggatcggcgaaagacctacaactacagggtggttcagtcaaagaactactca
gagatcgagatgcggggacgctgtagtgctggccaacgtgtcctggcctccctcattatc
cggttggcactggccgagaccttcagcagtaattgtggtgtcctagctttggatgagccc
accacgaacttggatcgcgccaatataaattcactatgtgaagccctgaattgcatcgtg
gaggagcgccaaagccagtccaactttatgctcatcatcattactcacgacgagaatttc
gtttcgtcgctgggcaagataacctcctaccatcgggtattccgcaacgacgagtgcaag
tcggttatacggagagtggaggccggtccatcaaagaaagctttgatagatcaataa
DBGET
integrated database retrieval system
