Drosophila erecta: 6551354
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Entry
6551354 CDS
T01060
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
der
Drosophila erecta
Pathway
der03013
Nucleocytoplasmic transport
der03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
der00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
6551354
03015 mRNA surveillance pathway
6551354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
der03019
]
6551354
Enzymes [BR:
der01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
6551354
5.6.2.5 RNA 5'-3' helicase
6551354
Messenger RNA biogenesis [BR:
der03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
6551354
mRNA cycle factors
Common to processing body (P body) and stress granule
6551354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
AAA_22
UvrD-helicase
NPHP3_N
AAA_16
ATPase
nSTAND3
SRP54
AAA_10
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
6551354
NCBI-ProteinID:
XP_001977057
UniProt:
B3NT15
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MSVDTYAPSSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSTSQSQTQNDQLELHPRRS
GGDANPRLASITNDLADLQFEEEDDEGGSSYVKELPVHACKYCGIHDPATVVMCNNCRKW
FCNGRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKADS
VVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLPWLVKQPSEQGQLRARQISAAQIN
KLEELWKDNIEATFQDLEKPGIDSEPAQVLLRYEDGYQYEKTFGPLVRLEADYDKKLKES
ATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYIPWSEIGHVIKV
PDNFGDDVGLELKTSSNAPVKCTSNFTVDFIWKCTSFDRMTRALRKFAIDRNSVSNYIYS
RLLGHGRPDSNDEVLFRGPQPKLYSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKT
VTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFL
ALHNQIRNMETNSELKKLQQLKDETGELSSADEKRYRILKRAAENQLLEAADVICCTCVG
AGDGRLSRIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWP
QPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQR
AYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLN
VALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKLV
NSMNIGAHFMSTMIADAKEVMVPGSIYDRSGGYGQGRQIPAQTMNGGQYGGSGGGPYGNS
PLGYGAPSSNSMMGFGLGSGGNGGAGGNNNFGNAGGAGPSWAAAHLHHDSIGYISNEHGA
AALGNMPVPVGMFMNMSNLPPRFYNQHQQAIMAAKQNRAIQQQSGNFTPANSGVGVTGSG
AGASLVGNKKTQKLGKLRAAGGGTGGAPATGGPGGQTGSICSATPFSQQPVPLSLQMTQP
SGFALSQQPELSQDFGQISQMDGLLSQDVAFNVAGERSLNQFSQPY
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacacgtacgcgcccagctcggcgctctcgttcctggacatggacgacaat
gagctgcttccgggtgcggatacgcaacccacccagtacgattaccgggactttaccatg
ccttccacctcgcagagccagacgcagaacgatcagctggagctgcaccctcgccgttct
ggcggggacgcgaatccgcgactggcgagcatcaccaacgatctggccgatctgcagttc
gaagaggaggatgacgaggggggcagctcgtacgtgaaggagctgccggtgcatgcgtgc
aaatactgcggcatccatgatccagccacggtggttatgtgcaacaattgccgcaaatgg
ttttgcaacggacgtggcagcacctccggttcgcacatcatcaatcatctggtgagggca
aagcatcgcgaggtgacgctccatggggaaggtcccctgggcgagacaatcctggagtgc
tactcctgtggtgtgcgcaacgtgtttgtgcttggcttcattccggccaaggccgattct
gtggtcgtgctgctctgccgccagccgtgtgccgcccagaattcgctaaaggacatgaac
tgggaccaggaacagtggaaacctctaattgcagaccgctgctttttgccttggctggta
aagcagcccagcgaacagggacaactgcgcgcgcgccaaatctcagcggcccagatcaat
aagctggaagagctatggaaggacaatattgaggccacgttccaggatctggagaagcca
ggcatcgactcggagccagcacaagtgctgcttcgctacgaggatggctatcagtacgag
aaaaccttcgggccgctggtccgccttgaggccgactacgacaagaagctgaaagagtcg
gccacccaggagaacatcgaggtacgctgggatgtgggcctgaacaagaagaccattgcc
tactttacgctggcgaagaccgactccgacatgaagctcatgcatggcgacgagcttcgc
ctgcactacgtaggcgagctgtacatcccatggagcgagatcggccacgttatcaaggta
ccggacaatttcggcgatgacgtcggcctggagctgaaaacctcatcgaatgcccccgtt
aagtgcaccagcaactttacggtggacttcatatggaagtgcacttcatttgatcgcatg
acgcgtgccttgcgaaaattcgctatagatcgcaactcggtgtcgaactatatttactcc
cgtctgttgggtcacggtcgtccggattccaacgacgaggtgctgtttcgcggaccacag
cccaagctctatagtgccccgcatctgcccgatttgaatcgcagtcaggtgtacgccgta
aaacatgcccttcagcgtccgctctcgctgatccaagggccgcccggaaccggcaaaacc
gtgacatcggccaccatcgtttaccagttggtcaagctgcatggtggcacagtgctggtg
tgcgctcccagcaacacagccgtggatcagctaacagagaagatccaccgcacaaacctg
aaagtggtgcgtgtgtgcgccaaaagtcgcgaggctatcgatagcccagtcagcttcctg
gcgctgcacaaccaaatccgcaatatggagaccaactcggagctaaagaagctccagcag
ctgaaagacgagactggcgagctgagctcagcggacgaaaagcgctaccgcatcctgaaa
cgcgccgccgagaaccaactgctggaggcggccgacgtcatctgctgcacatgcgtgggc
gccggcgatggacgtctatcacgcatcaagttcacctcgatcctgatcgatgagtctatg
cagtcgacggagccggagtgcatggtgccagtggtgctgggcgccaagcagctgatcctc
gtgggcgatcactgccagctgggaccggttgttatgtgcaagaaagcagctcgtgccggc
ctatcgcaaagtctgttcgagcgcctggtggtgttgggcatccgtccgttccggctggag
gtgcagtatcgtatgcaccccgagctgtcccagttcccgtccaacttcttctacgagggc
tcgctgcagaacggcgtctgcgcggaggatcgtcgccttaagctggatttcccctggccg
cagccagaaagaccgatgtttttcctggtgacccagggacaggaggagattgccggctcc
ggtacctcgttcctcaaccgcacagaggcggccaacgtggaaaagatcacgacgcgattc
ctcaaggcaggcatcaagccggaacaaattggaatcatcacgccttacgagggtcagcgc
gcgtacctggtgcagtacatgcaataccagggcagcctgcactctcgcctctaccaggag
attgagatcgccagcgtggacgcgttccaaggacgcgagaaggacatcattatcatgtcg
tgcgtgcgatccaacgagcgtcagggaatcggctttttgaacgacccacgtcgccttaac
gtggccctcacccgggcgaagtacggcatcatcattgtgggcaatcccaaagtgctagcc
aagcagcaactgtggaaccacctgctcaacttctacaaggaccgtaaggtgctcgtcgag
ggatcgctgaataacctcaaggagtcgctcatccacttccagaagcccaagaagctcgtc
aacagcatgaacattggggcacactttatgtccaccatgattgcggatgccaaggaagta
atggtgccgggctccatttacgatcgcagtggcggttacggccaaggtcgccaaataccg
gctcagaccatgaatggcgggcagtacggcggcagtggaggtggtccctacggaaactca
cccctcggttacggtgctcccagctccaattccatgatgggcttcggcctgggtagtgga
ggcaatggtggtgccggtggtaacaacaacttcggaaacgctggcggggcaggacccagt
tgggcggctgcccacctgcaccacgactctattggctacatatccaacgagcacggagca
gcagcgctgggcaacatgccagtcccggttggcatgttcatgaacatgagcaatcttccg
ccgcggttctacaaccagcaccagcaggcgatcatggcggccaagcagaatcgcgccatt
caacagcagtcgggtaacttcactccggctaattcgggagttggagtcactggatccgga
gcaggcgcctccctagtgggcaataagaaaacccagaaactgggaaaattgcgcgcagct
ggtggtgggactggtggagcaccggcaacaggaggaccaggcggccagacgggctccata
tgcagtgctactccgttcagtcagcagccggtacctttgtcgctgcagatgacccagccc
agcggatttgctctctcccagcagccggaactttcgcaggactttgggcaaatatcgcag
atggacggtttgctatcccaggatgtcgcctttaatgtggcgggcgagcgcagtttgaat
cagttctcacagccttattga
DBGET
integrated database retrieval system
