Drosophila erecta: 6554244
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Entry
6554244 CDS
T01060
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
der
Drosophila erecta
Pathway
der03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
der00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6554244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
der03019
]
6554244
Enzymes [BR:
der01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6554244
Messenger RNA biogenesis [BR:
der03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
6554244
mRNA degradation factors
3'-5' decay
Ski complex
6554244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
RhopH3_C
Motif
Other DBs
NCBI-GeneID:
6554244
NCBI-ProteinID:
XP_001982093
UniProt:
B3P8D9
LinkDB
All DBs
Position
Unknown
AA seq
1197 aa
AA seq
DB search
MSEIRGEENLERLRNYILRPELSLHNPLPDVLPRKLDPMRLLHAPLCPGSTKLAPRRDQS
GQILEFVEVDLEDVGASANNSMSMQREPGLLEEATRGSHSNFPFWPGGFDEQRQQIAALD
VDNFQFGDKLLTVPPGFTSGYDFSQSQSVTLPPVVADPSNVDLLENLEQDLDVQEWMKLT
RSEGTSSTGPPQGAKQSNVQLPSEDFKDVDDHIMKADLKPVLNISTTTKNFKSDWAEMVD
ISQPINDFKEQIPSPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIAL
SKRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLY
CGSDVTRDLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVG
STKKRKVYVISTLKRPVPLTHFLYTGTGEKSRDDIFLLVDAQGKFLQGNYEKAVERKKEM
QGKAKGGGAGSNNHFNAKQEQYTWIGLIDFLRRNNKMPVVAFTLSRNRCDSNLAALQSVD
LNTEREKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALQRGIGVHHSGILPILKEIVEML
FQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMRNLKPGEYIQMAGRAGRRGHD
ETGTAIIMCKGSVPPSMELRPMILGLPDKLQSQFILRYAVILTCLRIESIKVEDIMQFSF
KEFNQKLQLPTQQKQLRLAEDKFAMLPTLGEHLQPLVNFYDKAVEYWKEKHRIMKLIVTQ
AKIQKELKVGRVIVITQGKHYNKLAILLNIKSVMGKDTIYKVLVLDHQFKAKDSNSLQQG
ELYYKILSLTPRNMTFQPEGIGGHTVLDIKAIDIINITKSTLKVDAAAIMRNWEQRQLER
FKDSPPGASVVKAVTELNQLNDSYIASADNIKYVNLSKEIIVSADSEVAMLNYVDHLNRQ
VVNLLPHTNIAGFEQEFAKVYERRMLEIHIEELRFKNSAKNLTLYPDYCNKLQVLRALKY
IDELEEVTLKGKVACEMGQNELLITELILCNMFNDLEPAEIAALLSGLVFQAKMREKPVI
PEAMKKCVEAFEQINDTILAEEQRFQAAIETDNRLNFGLLEVVYEWARNKPFAEIMQLTT
VQEGIIVRCIQQLNETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagattaggggcgaggagaacctcgaacggttgcgcaattatatcctgcgaccg
gagctgtccctgcacaatcccctgccggatgttttgccccgcaaacttgatccgatgcgc
ctgttgcatgcgcctctttgtccgggaagcaccaagctggcacctcgccgggatcagagt
ggccagatactggagttcgtggaagtggacctggaggatgtgggcgccagtgccaacaac
tctatgtctatgcaacgggagccgggtttgctggaagaggcgacgcgtggctcccactcg
aattttcccttttggcctggtggattcgatgagcagcgccaacagatcgcagctctggat
gtggacaactttcagttcggagataagctgctaacggtgccaccgggctttacctctggc
tacgacttctcgcaatcacaatccgtaacactgccgcctgtggtcgccgatcccagtaac
gtggatctattagaaaacctagagcaggatctagacgtccaggagtggatgaagctaacg
cgcagtgagggaacaagttccactggaccccctcaaggtgccaaacagtcgaacgtgcaa
cttccttcagaggatttcaaagacgtggacgatcacatcatgaaggcggacctgaagcct
gtgctgaacatttctaccaccacgaagaacttcaagagcgactgggccgaaatggtggac
attagccaacccatcaatgacttcaaagaacagatacctagccccgccatggattttccc
ttcgaactggatgtatttcaaaagcaggccattctcaagctggaacaacgccagtatgtt
ttcgttgcagcccacacgtccgctggcaagacggttgtagctgaatatgccatcgcccta
tctaagcgggatctcacccgcaccatctacacatcgccgatcaaggcgttgtccaatcag
aagtaccgcgacttccgaaagaccttcaaggatgtgggccttattacaggcgacctgcag
atagagcccaccgcctcatgtctgatcatgaccaccgagattctccgctcaatgctgtat
tgcggcagcgacgtcacgcgggatctggagtgggtgatcttcgacgaggttcactatatt
aataaccccgagagaggacatgtctgggaggaggtcattatactgctgcccgaacatgtt
aacatcataatgctgagtgccaccgtgcccaataccttggaattggcggactgggttgga
agcaccaagaagagaaaggtctatgtgattagcacattaaagcgaccagttcctctcacg
catttcctctatactggtactggagaaaagagccgcgatgacatcttcctgctggtggac
gcccagggaaaatttctgcagggcaactacgagaaggccgtggaacgcaaaaaagagatg
cagggcaaggccaagggcggcggagctgggtcaaataaccactttaatgccaagcaggag
cagtacacctggatcggactaattgactttctgaggcggaacaacaagatgccagttgtg
gctttcactctgtcccgcaatcggtgtgactctaatttggccgccctgcagtcggtggat
ctaaacacggaaagggagaagggtgctgtgcagaaattcttcttgcagtgtctggccaag
ctgaagccaccggatcgtacaattccgcaggttctggttctaaaggacgctttgcagcga
ggaattggggtgcaccacagcggcatcttgcccattcttaaggagatcgtggagatgctc
tttcagaatgggctagttaagctgctcttcgccaccgaaacgtttgctatgggtgttaac
atgccggcacgcactgtggtctttgactcctgcaaaaagtttgacggactggagatgcgt
aacctgaaacccggcgaatacatccaaatggccggcagagctggacggcgtgggcacgac
gagacgggtacggcgatcataatgtgcaagggcagtgtgccaccatcaatggagctacgg
cccatgatcctgggcctgccggataaactgcagtcacagtttattctgcgctatgcggtt
atcctcacatgtctgcgcatcgagagcatcaaggtggaagatatcatgcagttcagtttc
aaggagtttaaccagaagctgcaattgcctacgcagcagaagcaactgcgcctggccgaa
gacaagttcgccatgcttccaacactcggcgaacatttgcaaccgctcgtcaacttttac
gacaaggccgtcgagtattggaaggaaaagcaccgcatcatgaaattaattgtaacacaa
gccaagatccaaaaggaactgaaggttgggcgcgtcattgtcatcacgcagggcaagcac
tacaataaactggccattctactcaacatcaagtctgtcatgggaaaggataccatctat
aaggtgctagtgctggaccaccaattcaaggcaaaggatagcaacagcctccagcaaggc
gagctctattacaagatactttcgttgacgccgcggaacatgaccttccagccagaggga
atcgggggccacactgtgctagacatcaaggccatagacattatcaatatcaccaagagc
acattgaaagtcgatgcagctgcgattatgcggaattgggagcagaggcagctggagcga
ttcaaggattcgcccccaggtgcatcggtggtcaaggctgtcaccgagctaaaccagctg
aacgatagttacattgccagcgcggataacatcaaatatgtgaatctctccaaggagata
atcgtgagcgctgacagtgaggtggcaatgctcaactacgtagatcacctgaatcgtcag
gtcgtcaatttgctgcctcataccaacattgccggattcgagcaagagttcgccaaggtt
tatgagcgccgaatgctggagatccacattgaggagctgcgcttcaagaactcggcgaaa
aatttgaccctctatccggactactgtaacaagctgcaggtgctgcgagccctgaaatac
atagatgaactggaagaggtcacgcttaagggaaaagtggcctgtgagatgggccaaaat
gagctactaatcacggagcttattctgtgcaacatgttcaacgatctggaaccggcagaa
atagccgctttgctctctggcctcgtcttccaggcgaagatgcgagaaaaaccggtaata
ccagaggcgatgaagaagtgcgtggaggcttttgagcagatcaacgatacaattctggcc
gaggagcagcgcttccaggcagccatcgagaccgataatcgcctaaactttggtctgttg
gaggttgtctacgagtgggctcgaaataagccctttgctgagattatgcaactaaccacg
gtgcaggagggcatcattgtacgatgcatccagcagctgaatgaaaccctgcgtgatgtt
aaaacggccgccattcggattggcaatcctggactgcagtccaagatggaagaggcgtcg
gctgctatcaagcgagatattgtattcaccgcatccttgtacacagaactgtag
DBGET
integrated database retrieval system
