Dermacoccus sp. PAMC28757: H7F30_02265
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Entry
H7F30_02265 CDS
T08446
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
derm
Dermacoccus sp. PAMC28757
Brite
KEGG Orthology (KO) [BR:
derm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
derm03016
]
H7F30_02265
Enzymes [BR:
derm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H7F30_02265
Transfer RNA biogenesis [BR:
derm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H7F30_02265
Prokaryotic type
tRNA splicing ligases
H7F30_02265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Egg_lysin
Motif
Other DBs
NCBI-ProteinID:
QNK53181
LinkDB
All DBs
Position
complement(467410..468579)
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AA seq
389 aa
AA seq
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MERISPTLFNWASILEDSTREQAVTTASMPFVFPHLALMPDAHLGRGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTQHTAADLPTERASVRQAIERAIPLSAGGANRKISREHMQVRL
DELETMAEEAGFDPAAYAKKWKLQLGSLGSGNHFIEISLDEEDRVWLFLHSGSRGVGNRI
AQHHIKAAEAYCRTNWIQLPDRDLAYLVEGTPQFDAYIRELRWAQHFALLNREEMMDRVV
RQYAEWVGEPVTELERINCHHNYTEQEKHFGKNVWLSRKGAINAEAGRPGLIPGSMGTAS
YVVVGKGNALSLNSSPHGAGRAFSRSAARKRFTGDELREAMKGIEYRDTDAFIDEIPGAY
KDIDQVMADAADLVEIRHTLRQIVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcatttccccgaccctcttcaactgggcctcgatccttgaggattcgacccgc
gagcaggccgtcaccacggcgtcgatgccgttcgtcttcccgcaccttgccctcatgccg
gatgcccacctcggccgtggcgcgaccgtcggctcggtcatcccgacgctcggggccatc
atcccggccgctgtcggcgtcgacatcgggtgcgggatgatcgccgtccgtacgcagcac
acggcggcggatctgcccaccgagcgtgcgtccgtgcgtcaggcgatcgagcgcgccatc
ccgctctcggcgggtggggccaaccgcaagatcagccgagagcacatgcaggtgcgcctc
gacgagctcgagacgatggccgaagaggccgggttcgacccggccgcgtacgcgaagaag
tggaagctccagctcggctcgctcggttccggtaaccacttcatcgagatctcgctcgac
gaggaggaccgggtgtggctcttcctgcactccggttcgcgaggtgtcggcaaccgcatc
gcccagcaccacatcaaggcggccgaggcgtactgccggacgaactggatccagctgccc
gaccgtgacctcgcctacctcgtcgagggaacgccgcagttcgacgcctacatccgtgaa
ctgcgctgggcgcagcacttcgcgctcctcaaccgcgaggaaatgatggaccgcgtcgtg
cgccagtacgccgagtgggtgggcgagccggtgacagagcttgagcgcatcaactgccac
cacaactacacggagcaggagaagcacttcgggaagaacgtgtggctctcacggaagggc
gcgatcaacgccgaggcagggcgtccgggtctcattccgggctcgatgggtacggcgtcg
tacgtggtcgtcggcaagggcaacgcgctctcgctcaactcgtcgccgcacggtgcgggt
cgtgcgttctcccgttctgcggcgcgcaagcgcttcactggtgacgagctgcgggaggcg
atgaagggcatcgagtaccgcgacaccgatgccttcatcgacgagatcccgggcgcgtac
aaggacattgaccaggtgatggcggacgccgccgacctcgtcgagatccggcacacgctg
cgtcagatcgtcaacgtcaagggcgactag
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