Dermacoccus sp. PAMC28757: H7F30_05395
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Entry
H7F30_05395 CDS
T08446
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
derm
Dermacoccus sp. PAMC28757
Pathway
derm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
derm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H7F30_05395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
derm03400
]
H7F30_05395
Enzymes [BR:
derm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H7F30_05395
DNA repair and recombination proteins [BR:
derm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H7F30_05395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNK53719
LinkDB
All DBs
Position
complement(1111276..1112223)
Genome browser
AA seq
315 aa
AA seq
DB search
MRPMLASPAAAPPTGPSWRHEVKWDGIRAIVTVSGGEMSIATRSGADATARFPEITGSHL
ADFDDIVLDGEIVALVDGAPDFRTVMHRLAPGGGRSRMSATSPEDARRMARTPVRFMAFD
VLRAAGHDVVTMPWSARRALLEGAGVADGVAVEVPEAYEDGAALFAATLEQGVEGIVSKR
VDAPYRPGVRSEEWLKSVHRQADSFVVGGWRPVAGSLAQVGAILVGEVTDDGLRYRGRVG
TGFSASSGRALLEWLTPMPQCPFTADDLPPEDLEGTHWVRPEITVDVTHLGRSAGGRLRQ
PSYKGLRLDIGGARG
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccatgctcgcctcacccgcagcagcgccgccgacggggccgtcgtggcgccac
gaggtgaagtgggacggcatccgcgccatcgtcacggtgagcggcggcgagatgagcatc
gccacccggtccggcgccgacgccacggctcgcttccccgagatcaccggctcgcaccta
gccgacttcgacgacatcgtgctcgacggcgagatcgtcgccctcgtcgacggagcaccc
gacttccgcacggtgatgcaccggctcgctcccgggggtggccgctcgcgaatgtcggca
acctcgcccgaggacgcccggcgcatggcccgaacccccgtgcgattcatggccttcgac
gtcctgcgcgccgccggccacgacgtcgtcacgatgccgtggagcgcccggcgcgccctg
ctcgagggggcgggcgtggctgacggcgtcgccgtcgaggtgccggaggcgtacgaggac
ggcgcggcccttttcgccgcgacgctcgaacagggcgtggaaggcatcgtgagcaagcgc
gtcgacgctccgtaccgacccggcgtgcgcagcgaggagtggctcaagagcgtccatcgc
caggccgactccttcgtcgtcggaggctggcggccggtcgcgggttcgctcgcgcaggtg
ggtgcgatcctcgtcggcgaggtgaccgacgacggcctgcgctaccgcggccgcgtgggg
accggcttctccgcctccagcggtcgggcgttgctcgagtggctcacgccgatgccacag
tgccccttcaccgccgacgacctgccgcccgaggatctcgagggcacgcactgggtgcgc
ccggagatcacggtcgacgtcacccacctcggccgcagcgccggcgggcgcctgcgtcag
ccgtcctacaagggtctgcgcctcgacatcggaggtgcgcgtggctga
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