Dermacoccus sp. PAMC28757: H7F30_08990
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Entry
H7F30_08990 CDS
T08446
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
derm
Dermacoccus sp. PAMC28757
Pathway
derm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
derm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7F30_08990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
derm03019
]
H7F30_08990
03009 Ribosome biogenesis [BR:
derm03009
]
H7F30_08990
Enzymes [BR:
derm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H7F30_08990
Messenger RNA biogenesis [BR:
derm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H7F30_08990
Ribosome biogenesis [BR:
derm03009
]
Prokaryotic type
rRNA processing factors
H7F30_08990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QNK51804
LinkDB
All DBs
Position
1875328..1878384
Genome browser
AA seq
1018 aa
AA seq
DB search
MAPENNDETTFASPFFAGSPFASQQAPETPEVDETEETDTTDEAAAAPAPGAAFGLLFQA
PDPQKRAPKRERMRREDERDEVSGSDDDAESRSEDGDDGDDTSRGNRGRGGRRGSRDGNN
DRSDSSANSVAAGDGDADDVNASGDDDTDDNDDDQTPRRRRRGGRGRRSNSSKNSGDSGD
SNNSGDKNSNESNGSNNGKNAERDGDANEDDTSDNASNDSDNGDEDSNDSGSRKRTRRRR
RSGSGGSDSDDPNTVTRVREPRKAKDEVTSIKGSTRLEAKKQRRREGREAGRRRTVITEA
EFLARRESVERVMVVREREGRTQIGVLEDGVLAEHYVSRQEQASSMAGNVYLGRVQNVLP
SMEAAFIDIGRGRNAVLYAGEVNWDAAGLDNQPKRIEHALKAGESVLVQVTKDPIGHKGA
RLTSQISLPGRFLVYVPGNSMTGISRKLPDVERARLKKILKEVVPADAGVIVRTAAEGAS
EEELRADVERLTKMWEKIQKKAESGNAPVLVHGEPDLTVRVIRDVFNEDFAKMVVSGDRA
WNEVHSYISEVAPDLTERLEKWTGEKDVFAKHRIDEQLAKAMDRKVWLPSGGSLVIDRTE
AMTVVDVNTGKFVGSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNR
ELVVRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLVEVFSEQCESCHGRGIIVHD
HPVENRDINGNDTNRKGRGSRRGGNGNGGSNNGGGNGNTSGGSNSNSNDSSHDKKGDERD
NGFAQIAAAAHAAAISAGDKSATSEPVSTASSEDAVVSEKDAATKAAAPERTTVRENVGH
VESSSTSTKSAPQEQGKAPARRRGSRRVATSTGAPTAAGEATVMTVQASTTTSDAPAAAA
ASPETPADAPKVAADSAPTQAEAPVVTQEATAAAKRPRRRAASSSGAPVSLQAVDLAAAP
MSSAPLTKVAGEASDAAGSAQSAPTQAAVTSEAKAPARKKRTRVVAPAGAPGTKADES
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggcccccgagaacaacgacgagaccaccttcgcgagccccttcttcgcaggtagtcct
ttcgcctcacagcaggctcccgaaacgccggaggtcgacgagaccgaggaaaccgacacc
accgatgaggcagctgcggctcccgcgcccggcgcagccttcggtctgctcttccaggct
ccggacccgcagaagcgcgctcccaagcgtgagcgtatgcgccgcgaggacgagcgtgat
gaggtctccggttcggacgacgacgccgagtcccgctcggaggacggcgacgacggggac
gacacctcgcgtggcaaccgcgggcgaggcggtcgtcgcggttcgcgcgacgggaacaac
gatcgcagcgacagttcggccaactccgtcgccgcgggggacggcgacgccgacgacgtg
aacgcctccggcgacgacgacaccgatgacaacgacgacgaccagaccccgcgtcgccgc
cggcgcggtggccgcggtcgccgctcgaactcctccaagaactcgggcgattccggcgac
tcgaacaactcgggcgacaagaactcgaacgagtcgaacggctcgaacaacggcaagaac
gccgagcgcgacggcgacgcaaacgaggacgacacctcggacaacgcctcgaacgactcc
gacaacggcgacgaggactccaacgactcgggttcgcgcaagcgcacccgccgtcgtcgc
cgcagcggttcgggcggctcggactccgacgacccgaacaccgtcacccgcgtccgcgag
ccccgcaaggccaaggacgaggtcacctcgatcaaggggtcgacgcgtctcgaggcgaag
aagcagcgccgccgcgagggccgcgaggccggtcgtcgccgcaccgtcatcaccgaggcc
gagttcctcgctcgccgcgagagcgtcgagcgcgtcatggtcgtgcgtgagcgcgagggc
cgcacgcagattggtgtcctcgaggacggcgtgctcgccgagcactacgtctcgcgccag
gagcaggcctcgtcgatggccggcaacgtctacctcggtcgcgtccagaacgtcctgccc
tccatggaggccgcgttcatcgacatcggtcgcggccgcaacgccgtgctgtacgccggt
gaggtcaactgggacgccgccggcctcgacaaccagcccaagcgcatcgagcacgccctc
aaggcgggcgagagcgtcctcgtccaggtgacgaaggacccgatcggccacaagggcgcc
cgcctgacctcgcagatctcccttccggggcgcttcctcgtctacgtgccgggcaactcg
atgacgggcatcagccgcaaactgcccgacgtggagcgcgcgcgcctgaagaagatcctc
aaggaggtcgtgcccgccgacgccggcgtcatcgtgcgcacggctgccgagggtgcctcc
gaggaggagctgcgcgccgacgtcgagcgcctcacgaagatgtgggagaagatccagaag
aaggccgagagcggcaacgccccggtgctcgtgcacggcgagccggacctcacggtccgc
gtcatccgtgacgtcttcaacgaggacttcgccaagatggtcgtctccggcgaccgcgcc
tggaacgaggtgcactcctacatctccgaggtggcgcccgacctcaccgagcgcctcgag
aagtggaccggcgagaaggacgtcttcgccaagcaccgcatcgacgagcagctcgccaag
gccatggaccgcaaggtctggctgccgagcggtggttcgctcgtcatcgaccgcaccgag
gccatgacggtggtcgacgtcaacacgggcaagttcgtcggctccggcggcaacctcgaa
gagacggtgacgaagaacaacatcgaagctgccgaggagatcgtgcgtcagctgcgactg
cgcgacatcggcggcatcatcgtcgtcgacttcatcgacatggtgctcgagagcaaccgc
gagctcgtcgtgcgccgtctcctcgagtgccttggacgtgaccggacgaagcaccaggtc
gccgaggtgacgtcgctcggcctcgtgcagatgacgcgtaagcgtgtcggttcgggcctc
gtcgaggtgttctccgagcagtgcgagtcgtgccatgggcgcggcatcatcgtgcacgac
cacccggtcgagaaccgtgacatcaacggcaacgacacgaaccgcaagggtcgtggctcg
cgtcgcggtggcaacggcaacggtggctccaacaacggaggcggcaacggcaacacctcc
ggcggctcgaactcgaactccaacgactcgtcccacgacaagaagggcgacgagcgcgac
aacgggttcgcccagatcgcggctgcggcgcacgctgctgccatctccgcgggcgacaag
tcggccacgtccgagccggtctccacggcctcgtccgaggacgcagtcgtgagcgagaag
gacgccgcgacgaaggcggccgcacccgagcgcaccacggtgcgtgagaacgtcgggcac
gtcgagtcgtcgagcacctcgacgaaaagcgcgccgcaggagcagggcaaggccccggct
cgccgtcgcggctcgcgtcgtgtcgccacatcgacgggtgcgcccacggcagccggagag
gcgaccgtcatgacggttcaggcctccacgaccacgagtgacgctccggcagctgccgct
gcgtcgcccgagacgcccgctgatgctccgaaggtcgccgctgactcggccccgactcag
gcggaggcgcccgtcgtcacgcaggaggcgacggccgccgcgaagcgtccgcgtcgtcgt
gcggcgtcgagctcgggtgcgcccgtgagcctgcaggccgtcgacctggctgccgcgccg
atgtcgagcgcgccgctgacgaaggtcgccggtgaggcgagcgacgccgccggttccgcg
cagagcgctccgacgcaggctgcggtcacctccgaggcgaaggccccggcccgcaagaag
cgcacgcgcgtcgtcgccccggccggtgcgccgggcacgaaggccgacgagtcctga
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