Desulfuromonas soudanensis: DSOUD_0074
Help
Entry
DSOUD_0074 CDS
T04049
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
des
Desulfuromonas soudanensis
Brite
KEGG Orthology (KO) [BR:
des00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
des03016
]
DSOUD_0074
Enzymes [BR:
des01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSOUD_0074
Transfer RNA biogenesis [BR:
des03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSOUD_0074
Prokaryotic type
tRNA splicing ligases
DSOUD_0074
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALC14875
UniProt:
A0A0M4DEC3
LinkDB
All DBs
Position
complement(90679..92124)
Genome browser
AA seq
481 aa
AA seq
DB search
MTLRIEQIDACRWRIPKEGAMRTEGLVFASRQMMAALQKEEALAQVRNVATLPGIVGPSI
AMPDIHWGYGFPIGGVAAFDPEEGGIVSPGGVGYDINCGVRLLRSALVEDQVRPRLKALA
DTLFTNVPSGVGSQRRDLKLSIEEETRVLRQGARWAVEHGFGSAEDLLHIEEGGTIAGAD
PELVSERALERGRAQLGTLGSGNHFLEVQVVDEIVDLRVAEVLGLFPGQITVSIHTGSRG
LGYQVCDDSLRTMLSASRKYGIELPDRQLCCAPLTSSEGRHYLAAMACAANFAFANRQLI
TAWVRESFAEVFALGEGDLRLSVIYDVCHNIAKMETHKIGGENRRLCVHRKGATRAFPPG
HPQTPELYRSVGQPVLIPGDMGRYSYVLVGTAGAFSETFGSTCHGAGRVMSRHAAKKAAH
GRNIVGELAARGILIRAAGQATVAEEISEAYKDVTEVVDVVQRAGIGKIVARLRPLAVIK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgcgcattgaacagatcgacgcctgccgctggcgcatcccgaaagagggcgcg
atgcgcaccgaggggctggtctttgccagccggcagatgatggccgcgctgcagaaggag
gaggccctggcgcaggtgcgcaacgtcgccaccctgccggggatcgtcggtccgtccatc
gccatgcccgatattcactggggatacggcttccccatcggcggcgtcgccgccttcgac
ccggaggaggggggaatcgtctcccccggcggagtcggctacgacatcaactgcggagtg
cgtctgttgcgctcggccctcgtggaagatcaggtccggccgcgcctcaaggccctcgcc
gacaccctctttaccaacgtcccttcgggggtcggttcgcagcgccgcgacttaaagctc
tccatcgaagaggagaccagggttctgcgccagggggcacgctgggcggtggagcacggc
ttcggcagcgccgaggatttgctccacatcgaggaaggagggaccatcgccggcgccgat
cccgagctcgtttccgagcgggccctggagcgtgggcgggcccagctcggcaccctcggc
agcggcaatcacttcctcgaagtccaggtcgttgacgagatcgtcgatctccgggtcgcc
gaggtgctcggcctcttccccggccagatcaccgtcagcatccacacgggaagccgcggc
ctcggttaccaggtctgcgatgactccctgcggaccatgctctcggccagccgcaaatac
ggcatcgaactccccgaccggcagctctgctgcgcccccctcaccagttccgaggggcgc
cactacctggcggccatggcctgcgccgccaacttcgccttcgccaaccgtcagctgatc
accgcctgggtgcgcgaatccttcgccgaggttttcgccctcggcgaaggcgacctgcgc
ctctcggtgatctacgacgtctgccacaacatcgccaagatggagacccacaagatcggc
ggagaaaatcggcgcctctgcgtgcatcgcaagggggcgacccgcgccttccctccggga
cacccccagacccccgaactctaccgcagcgtcggccagccggtcctcatccccggcgac
atggggcgctattcctacgtcctcgtcggcaccgccggggccttttccgaaaccttcggc
tcgacctgccacggcgccggtcgggtcatgtcccgccatgccgccaagaaggccgcccac
ggccgcaacatcgtgggggaactcgccgcccgggggattctcatccgcgccgccggacag
gccacggtcgccgaggagatttccgaggcctacaaggacgtcaccgaggtggtcgacgtg
gtgcaacgggcggggatcggcaagatcgtcgcccggctgcggccgctggcggtgatcaag
ggatag
DBGET
integrated database retrieval system
