Desulfuromonas soudanensis: DSOUD_2772
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Entry
DSOUD_2772 CDS
T04049
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
des
Desulfuromonas soudanensis
Brite
KEGG Orthology (KO) [BR:
des00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
des03019
]
DSOUD_2772 (hrpB)
Enzymes [BR:
des01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSOUD_2772 (hrpB)
Messenger RNA biogenesis [BR:
des03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSOUD_2772 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
Flavi_DEAD
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ALC17510
UniProt:
A0A0M4D881
LinkDB
All DBs
Position
complement(3042489..3044960)
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AA seq
823 aa
AA seq
DB search
MDPTPAAALPIDAVLPELQRLLAAHPAAVLEAPPGAGKTTRVPLALLSAPWLQGRSIVML
EPRRLAASNAACFMARLLAEKVGQTVGYAIRYERRVSRATRIEVVTEGILTRRLQTDPEL
NGVGLIIFDEFHERNLNSDLALALCRDAQLGLRDDLKILVMSATLDAGPVARLLGDCPRI
SSQGRAFPVSVRYLGQEPQGRVGDYVPPAVRRALSESSGDLLVFLPGVGEIRRCAAALSD
LEAEVDLRPLYGDLPFAEQERAILPGPRRKVVLSTNIAETSLTIDGVAVVIDAGFERRPR
FDAARGMTALETVRISAASAAQRAGRAGRLGPGVCYRLWTEGTQGTLLPFTPPEIRGADL
APLALELARWGVQDAGQLAWLDPPPAGHLAGAQALLRLLGALDQSGKLTSLGEEMASLPA
HPRLARLLLAAREIGRPGLGADLAALLGERDPGGSDGPCQASDSDLLDRLERLRHRGGEA
AARAARYFREKLGVTGAEPAPDAAGVGRLLAVAYPDRIGREREPGSGRYLLSAGFGARLA
PSSAVKNGEWLVAVEVVARPGEGEIRLASRICRETVEELFGKTLEWQREVDWDERIGRVV
AREVRRLGALLLQERPASATETDVVPALLTVIRRKGLDLLDWSPAARQLRARGQLLAAHR
PGWPDLSDGALLATVDTWLAPHLAGVTSLAALRRVDLCSALQGLLGWQRQQELARLAPER
LEVPSGSHIRLDYEASDGPVLACKLQELFGLAETPRVAGGAVPVLIHLLSPAGRPLAVTR
DLRSFWDSVYPEVKKEMKGRYPRHPWPDDPWNAVATRHIKRRT
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggacccgaccccagcagcagctctccccatcgacgccgtcctccccgaattgcagcga
cttctggccgcacatccggccgcggttctcgaggctccccccggcgccggcaagaccacc
cgggtccccctggcgcttctgtctgcgccctggctgcaagggcgctccatcgtcatgctc
gaaccgcggcggctggcggcgagtaacgccgcctgcttcatggcccggctcctcgccgag
aaggtcggccaaacggtcggctacgccatccgctatgagcgcagggtgtcccgggccacc
cgcatcgaggtggtcaccgaggggatcctcacccgtcgcctccagaccgacccggaactc
aacggcgtcggtctgatcatcttcgatgaatttcacgaacgcaacctcaactccgatctc
gccctggccctctgccgcgacgcccagctcggcctgcgcgacgatctgaagatcctggtg
atgtcggcgaccctcgacgctggtccggtggcccggctcctcggcgattgcccgcggatc
agcagccaggggcgggccttccccgtttcggtgcgctacctgggacaggagccgcagggg
agggtcggcgactacgtcccgccggcggtgcggcgggcgctctccgagtcctccggggat
ctcctggtctttctccccggcgtcggcgagatacgccgctgcgccgcagccctctccgat
ctcgaagccgaggtcgatctccgccccctgtacggcgatctcccctttgccgagcaggag
cgggcgatccttcctggaccgcggcgcaaggtggtcctctcgaccaacatcgccgagacc
agcctgaccatcgacggggtggcggtggttatcgatgccggttttgagcgccgcccccgc
ttcgacgccgcccgcggcatgacggccctggagaccgtgcgcatctcggccgccagcgcc
gcgcagcgcgccggccgcgccggtcgcctcggccccggcgtctgttaccggctctggacg
gaagggacgcaggggacgctcctccccttcactccgccggagatccgcggtgccgatctt
gctcccctcgccctcgagctcgcccgctggggggtgcaggacgccggtcagctcgcctgg
ctcgaccctcccccggccgggcatctggccggggcgcaggcgctgctgcgcctcctcggc
gccctggaccaaagcggaaaactgacctccctcggggaggagatggcctcccttcccgcc
cacccgcgtctcgcccgactcctccttgccgcccgggaaatcgggaggcccggcctcggc
gccgatctggccgccctcctcggcgagcgcgatcctggcggaagtgacggcccctgtcaa
gccagcgacagcgacctcctcgaccggctcgagcggctgcgacatcgcggcggcgaggcg
gcggcgcgggcggcccgctacttccgggaaaaactcggcgtcaccggcgcggaaccggca
cccgatgccgcaggggtcggccgcctcctggccgtcgcctaccccgaccgcatcggccgc
gagcgcgaacccggctccggacgctaccttctttccgcaggtttcggcgcccgtctggcg
ccgtcctctgcggtgaagaacggggagtggctggtggcggtggaggttgtcgccaggccg
ggggagggggagatccgcctcgccagccggatctgtcgggaaacggtggaagagctcttc
ggcaaaacgcttgaatggcagcgggaagttgactgggacgagcggatcggccgggtggtc
gcccgcgaggtccggcgcctcggcgccctcctcttgcaggagcgcccggcatcggcaacg
gaaacggacgtcgtccccgctcttctgacggtgatccgccgcaaggggctcgatctcctc
gactggagcccggccgcccggcaactgcgggcgcggggacaactcctggccgctcatcgc
cccggctggcccgatctctccgacggggcccttctggcgacagtggacacctggctggcg
ccgcatctggcgggagtgacgagtctagccgccctgcgccgggtcgatttgtgctctgct
ctgcagggtctgctcggctggcagcggcagcaggaactggcccgcctcgccccggagcgc
ctggaggtgccgagcggttcccacatccgcctcgattacgaggcctccgacggccccgtt
ctcgcctgcaagctgcaggagctcttcggcctcgccgagaccccccgggtcgccggcggc
gccgtcccggtcctgatccacctcctctccccggccggccggccgctggccgtcacccgc
gacctgcgctccttctgggacagcgtctatcccgaggtaaaaaaggagatgaaggggcgc
tatccccggcacccctggcccgacgacccctggaacgccgtcgccacccgccacatcaaa
cgccggacctag
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