Desulfuromonas soudanensis: DSOUD_2814
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Entry
DSOUD_2814 CDS
T04049
Symbol
rhlB
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
des
Desulfuromonas soudanensis
Pathway
des03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
des00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSOUD_2814 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
des03019
]
DSOUD_2814 (rhlB)
Enzymes [BR:
des01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSOUD_2814 (rhlB)
Messenger RNA biogenesis [BR:
des03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSOUD_2814 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
Utp25_C
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
ALC17550
UniProt:
A0A0M4DJI7
LinkDB
All DBs
Position
complement(3089079..3090329)
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AA seq
416 aa
AA seq
DB search
MKFTELNFPESVLKGIEKAGFVDLTPVQEESIPLALLGKDVAAQAQTGTGKTAAFLLSLF
TRMLANPRETSNNPRALVMAPTRELVVQIVEDAKILGAFCPFKVQAIFGGMDYDKQRQAL
RSGVDVIVATPGRLIDYARQKVFSFDSVEALVIDEADRMFDMGFIKDLRFILRKLPPVEK
RQTMLFSATLSHRVMELAYEFMNLAEKVSIEPQQVTAERVEQILYHAGRREKFPLLLGLL
KKDPGAERVLVFVNTKREAEHLAERLQANDFKAAVISGDIPQNKRMRILTDFKEGHLTFL
VATDVASRGIHIDGVTHVINYDLPQDAEDYVHRIGRTARAGALGKAISFADEDLVFHLPD
IEEYIGQKIPSAFPEDDDFCWDYKRSPPRKRAPIPEKFGAGARKPAARRGPPRRKP
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaccgaactgaacttccccgaatcggtcctcaaggggatcgaaaaggccggg
ttcgtcgatctgacccccgtccaggaggaatcgattcctctggcactcctggggaaggac
gtcgccgcccaggcccagacgggaacgggcaagacggccgccttcctcctctcactcttc
acccggatgctggccaatccccgcgagaccagcaacaacccccgggccctggtgatggcg
ccgacccgggaactggtggtgcagattgtcgaggacgccaagattctcggtgccttttgc
cccttcaaggttcaggccattttcggcggcatggattatgacaagcagcgtcaggccctc
aggtccggagtggacgtcatcgtcgccacccccggccgtctcatcgattatgcccggcag
aaggtcttctcctttgacagcgtcgaggcgctggtcatcgacgaggccgaccgcatgttc
gacatggggttcatcaaggatctgcgcttcattctgcgcaaacttccgccggtggagaag
cgccagaccatgctcttctccgccaccctctcccaccgggtcatggagctcgcctacgag
ttcatgaacctggccgagaaggtgagtatcgaaccccagcaggtgacggccgagcgggtg
gagcagatcctctaccatgccggacgccgggaaaagttccccctgctgctcgggctcctc
aagaaagatccgggagcggagcgggtcctggtcttcgtcaacaccaagcgggaagccgag
cacctcgccgagcgcctccaggccaacgatttcaaggcggcggtgatctccggcgacatc
ccccagaacaagcggatgcggatcctcaccgatttcaaggaagggcacctgaccttcctg
gtggccaccgacgtcgcctcccgggggatccacatcgacggggtcacccatgtcatcaat
tacgacctcccgcaggatgccgaggattacgtccatcgcatcggccgcaccgcccgggcc
ggagccctggggaaagcgatcagtttcgcggacgaggacctggtcttccatctccccgac
atcgaggaatacatcggccagaaaattcccagcgcctttcccgaagacgacgatttctgc
tgggactacaagcgcagcccgccacggaagagggcgccgatccccgagaagttcggtgcc
ggcgccaggaagcctgctgcgcggcgcggtcccccccggcgcaagccctag
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