Desulfuromonas soudanensis: DSOUD_2855
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Entry
DSOUD_2855 CDS
T04049
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
des
Desulfuromonas soudanensis
Pathway
des03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
des00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSOUD_2855 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
des03021
]
DSOUD_2855 (rpoB)
03400 DNA repair and recombination proteins [BR:
des03400
]
DSOUD_2855 (rpoB)
Enzymes [BR:
des01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSOUD_2855 (rpoB)
Transcription machinery [BR:
des03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSOUD_2855 (rpoB)
DNA repair and recombination proteins [BR:
des03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSOUD_2855 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
DUF8337
Motif
Other DBs
NCBI-ProteinID:
ALC17591
UniProt:
A0A0M4CYL5
LinkDB
All DBs
Position
complement(3121528..3125634)
Genome browser
AA seq
1368 aa
AA seq
DB search
MAYSVANNQLLRKHFAEIKRIIDIPNLIDIQKNSYKRFLQAELPPSARQNIGLEAVFRSV
FPIRDFSETCSLEYVSYSLGTPKYDVDECHQRGMTFAAPVKVRVRLVSWDVDKESGVQSI
RDIKEQEVYFGEIPLMTENGTFIINGTERVIVSQLHRSPGVFLDHDKGKTHSSGKILYNA
RVIPYRGSWLDFDFDHKDILYVRIDRRRKLPATVLLKALGYSAEELLNYYYDADQIFIDG
AGYKKRLNVDLLPGQKASFDVVAEDGEVLVKANRKFTKAAIRKLSEKGIEFIRILEEDVL
GKIASTDIIDTATGEVLVECNDEITASKLEELRSRGINEFKVLFIDHLYVGPYLRDTLVL
DRIATPEDAMIEIYRRLRPGDPPTVRSATALFESLFFNPERYDLSAVGRLKLNYKLGLET
PLEHTTLTKEDILQVVRYLIDLRNGKGAIDDIDHLGNRRIRAVGELLENQYRVGLVRMER
AIKERMSLQEIDSLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEITHKRRLSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRM
VKDLTVTSDIRYFSALEEEGHAIAQANAPLNENGTFVNELVNARKNGEFMLMNREEIELM
DVSPMQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRADAPLVGTGMERIVAHDSG
AAVVARHNGVVEGVDAARIVVKIDEGEVDETGTGVDIYTLTKFIRSNQNTCLNQKPIVKI
GDKVKRGEIIADGPSTQWGELALGQNVLVAFMPWEGYNFEDSILISEKLIKEDRYTSIHI
EEFECVARDTKLGKEEITDDIPNLGEDALADLDESGIIRIGAEVQPGDIMVGKITPKGET
QLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVEGVVIGARVFSRKGSDKDSRTELIEKAEI
DKLLKDQNDEIRIIRDSAKGKLQGLLLNQTAAVSILDEAGQTLLAKGKKITAELLAKVPF
QRWKEISLAAADEIEEKVATLFARLGDREELIRGVFADKIEKLKRGDDLPPGVIKMVKVY
VAIKRKLSVGDKMAGRHGNKGVLSRVLPEEDMPYMADGTPVEIVLNPLGVPSRMNVGQIL
ETHLGLGARGLGMQIQEYLDKNYGTDKLKAKVKEIYGNKELDVFIDGLSEEDTLAMAKRL
SNGVPMASPVFEGVSEAQMKAEMERGGFSSTGQMTLYNGKTGDAFKEKVTVGIMYMLKLH
HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAHALQEFLTVKSD
DVAGRTRMYEAIVKGKQTLEAGLPESFNVLIKELQSLCLDVELLEEEE
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcggttgcgaataaccagcttctgaggaaacattttgccgagatcaagagg
atcatcgacatacccaacctcattgatatccagaaaaactcctacaagcgtttcctccag
gcggagcttcctccttcggcgcggcagaacatcggccttgaagccgtttttcgttccgtg
tttccgatccgtgatttcagcgaaacctgttcactagaatatgtctcctactccctcggt
acgcccaagtacgatgtggacgagtgccaccagcggggaatgacctttgccgctcccgtc
aaggtccgggtccgcctggtctcctgggacgtcgacaaggagtcgggggtccaatcaatc
cgcgacatcaaggagcaggaggtctacttcggtgagatcccgctcatgactgaaaacggg
actttcatcattaatgggactgaaagagtcatcgtcagccagctgcaccggtctcccggt
gtcttcctcgaccacgacaagggaaagacccactcgagcggcaagattctctataacgcc
cgggtgatcccctatcgcggttcctggctcgacttcgactttgatcataaagacatcctc
tacgtgcgtatcgaccgccgccgcaagctgccggcgaccgtgcttctcaaggccctcgga
tactccgcagaggaacttctcaactattattacgacgccgaccagattttcatcgacggc
gccggctacaaaaaacgtctcaacgtcgaccttctccccgggcagaaggccagcttcgat
gtcgtggccgaagacggcgaagtcctagtcaaggccaaccgcaagttcaccaaggcggcg
atccgcaagctctccgaaaagggaatcgagttcatccgcattcttgaagaggacgtgctc
ggcaagatcgcttccaccgacatcatcgacacggcgaccggtgaggtcctcgtcgaatgc
aacgacgagatcaccgcctccaagctcgaggagctgcggtcccgggggatcaacgagttc
aaggttctcttcatcgaccacctctatgtcggaccctatctgcgggacaccctggttctc
gaccggatcgccactcccgaagacgcgatgatcgagatctaccgccgtctgcgccccggc
gatcctccgaccgtacgcagcgccacggcccttttcgagagcctcttcttcaatccggag
cgctacgacctctcggccgtcggacgtctcaagctcaactacaagctggggctggaaacg
cccctcgagcacaccaccctcaccaaggaagacatccttcaggtggtgcgctacctcatc
gacctgcgcaacggcaagggggcgatcgacgatatcgaccacctcggcaaccggcggatc
cgtgctgtcggcgagctgctggaaaaccagtaccgcgtcggcctggtgcggatggagcgg
gcgatcaaggagcggatgagtctgcaggagatcgacagtctcatgcctcacgacctgatc
aactccaagccggtttcggcggtggtcaaggagttcttcggctcctcgcagctctcccag
ttcatggaccagaccaacccgctgtcggaaattacccacaagaggcgcctttcggccctc
ggaccagggggtctgacccgcgagcgggccggctttgaggtccgggacgtgcatccgacc
cattacggccgcgtctgtcccatcgagacccccgagggtccgaatatcggtctgatcgct
tccctttcaacctatgcccggatcaacgagcacggcttcgtcgagactccttaccggatg
gtcaaggatctgacggtcaccagcgacattcgctacttctccgccctggaagaagaaggg
cacgccatcgcccaggccaacgcccctctcaacgaaaacgggacgttcgtcaatgaactg
gtcaatgcgcggaagaacggcgagttcatgctgatgaaccgcgaagagatcgagttgatg
gacgtttcgcccatgcagctcgtttccgtcgccgcctcgctgatcccgtttctcgaaaat
gacgacgccaaccgggccctgatggggtccaatatgcagcgtcaggccgtccccctgctg
cgggccgatgcgccgctggtcggtacggggatggagcggatcgtggctcacgattccggt
gccgcggtggtggcccgtcacaacggtgtggtcgagggtgttgatgcggcccgcatcgtc
gtcaagatcgacgagggtgaagtggatgagaccggaaccggggtggacatctacaccctg
accaagttcatccgttccaaccagaacacctgtctcaaccagaagccgatcgtcaaaatc
ggcgacaaggtcaagcgcggcgaaatcatcgccgacggcccttcgacccagtggggcgaa
ctggccctcgggcagaacgtcctggtcgccttcatgccctgggaagggtacaacttcgaa
gactcgatcctgatttccgagaagctgatcaaggaggaccgctatacctcgatccacatc
gaggagttcgagtgcgtcgcccgggacaccaagctcggcaaggaagagatcaccgacgat
atccccaacctcggcgaggatgctctggccgacctcgacgagagcggcatcatccgcatc
ggcgccgaggtgcaaccgggcgatatcatggtcggcaagatcacccccaagggggagacc
cagctctctcccgaagagaagctgctgcgggccattttcggcgagaaggccggggatgtc
cgcgatacctccctgcgcgtccctccgggggtcgaaggggtggtcatcggcgcccgcgtc
ttttcccgcaaggggtccgacaaggacagccgcacggagctgattgagaaggctgaaatc
gacaagcttctcaaggaccagaacgacgaaatccgcatcattcgcgactcggccaagggg
aaactccaggggctcctcctgaaccagaccgccgcggtctccatcctcgacgaggcgggg
cagaccctgctggccaaggggaagaagatcacggccgaactgctggccaaggtccccttc
cagcgctggaaggagatttcgctggccgcggccgacgagatcgaagagaaggttgccacc
ctctttgcccgcctcggcgatcgcgaggagctgattcgcggcgtcttcgccgataagatc
gaaaagctcaagcgcggcgacgacctccctccgggggtcatcaagatggtcaaggtctac
gtcgccatcaagcgcaaactctccgtcggcgacaagatggccggtcgccacggaaacaaa
ggggtcctctcccgggttcttcccgaagaggatatgccctacatggccgacggcaccccg
gtggagatcgttctcaatcccctcggcgttccttcgcgtatgaacgtcggccagattctc
gaaacccacctcggccttggtgcccgcggcctcgggatgcagatccaggagtaccttgac
aagaattacggcacggataagctcaaggccaaggtcaaggagatctacggcaacaaggag
ctcgacgtcttcatcgacggactgtccgaggaggacactctggccatggccaagcgcctc
tccaacggcgtgccgatggcgtccccggtctttgagggggtcagcgaagcccagatgaag
gcggagatggagcgtggaggcttctccagcaccggccagatgactttgtacaacggcaag
accggtgacgccttcaaggagaaggtcaccgtcggaatcatgtacatgctcaagctccat
cacctggtcgacgacaagatccacgcccgcagcatcggtccttacagcctcgtcacccag
cagccgctgggagggaaggcgcagttcggcggtcagcgtctcggcgagatggaggtctgg
gccctcgaagcctatggggccgctcatgccctccaggaattcctcacggtcaagtccgac
gacgtcgccgggcggaccaggatgtacgaggcgatcgttaaagggaagcagacgctggag
gccgggctccccgagtccttcaacgtgttgatcaaagaactgcagtccctgtgtctcgac
gtcgaactcctcgaagaagaagaataa
DBGET
integrated database retrieval system
