Desulfuromonas soudanensis: DSOUD_3096
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Entry
DSOUD_3096 CDS
T04049
Symbol
rep
Name
(GenBank) ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
des
Desulfuromonas soudanensis
Pathway
des03420
Nucleotide excision repair
des03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
des00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSOUD_3096 (rep)
03430 Mismatch repair
DSOUD_3096 (rep)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
des03400
]
DSOUD_3096 (rep)
Enzymes [BR:
des01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSOUD_3096 (rep)
DNA repair and recombination proteins [BR:
des03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSOUD_3096 (rep)
MMR (mismatch excision repair)
Other MMR factors
DSOUD_3096 (rep)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
ResIII
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ALC17821
UniProt:
A0A0M4D3M1
LinkDB
All DBs
Position
complement(3402958..3404997)
Genome browser
AA seq
679 aa
AA seq
DB search
MDLSTLNKEQLTAVRHGEGPLLLLAGAGSGKTRVITCRIAYLRLQRGVPAEQILAVTFTN
KAAREMKERVEELVGRKNVKGMIISTFHSLCVRILKEDIERLGYKKNFSIYGTADQGRLV
RDLIQAHSLDGRRFDADRVLFLISDAKNRLISPEQFLVRHHDDYEYLAAEIYPRYQKALK
AYNAIDFDDIIMLTVRLFREHPEVLAKYQQRYRYLMVDEYQDTNAAQYLLLRSLALVHGN
LCVVGDDDQSIYGWRGADLGNILGFEKDFPGTTVIKLEQNYRSTGNILAAANAVIKNNGQ
RKEKALWTSGESGPLVDYLCCEDAEDEAREVVERIHGARFRHDLAYRDFAILYRTNAQSR
AFEEQLRYENIPYVLIGGQQFFDRKEVKDTVAYFKVLVNPRDEVNLLRILNFPKRGIGET
TADRLIRVSTEEQRPLWDVLRDPPGSEELGEKAHRALADFVALMEGFRARFSSTADLAAL
GREFLETLHIEEELYRTADDPKKARRRVENVGEVINALASYQERDEQPTLAGFLSKVSLL
DRDEPPRGGKDAKLAQDAVILMSLHSSKGLEYPYIFLVGMEEGFLPHQKSVGEHVDVDEE
RRLCYVGITRARQVLTLLGAARRKKYGKMLPREPSRFLAEIPAELLCTQQSKGRPEASPE
EEEAMASNFFSSMKSLLGD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggatctcagtaccctcaacaaggaacagctcaccgcggtgcgccacggcgaagggccc
ctgctccttttggccggcgccggctcggggaagacccgggtcatcacctgccgcatcgcc
taccttcggctgcagcggggggttcccgccgagcagattctcgccgtgaccttcaccaac
aaggcggcccgggaaatgaaggagcgggtcgaggaactggtggggcgcaagaacgtgaag
gggatgattatctccaccttccattccctctgcgtgcggattctcaaggaagacatcgaa
cgcctcggctacaagaagaatttttccatctacggcaccgccgaccaggggcgcctggtg
cgggacctgatccaggcgcacagcctcgacgggcgcaggttcgacgccgaccgggtcctc
tttctgatctccgacgccaagaaccgcctcatctcccccgagcagttcctggttcgccac
cacgacgactacgaatacctggccgcggagatctatccccgctaccagaaggccctcaag
gcctacaacgccatcgatttcgacgacatcatcatgctcaccgtccgcctcttccgggag
caccccgaggtgttggccaagtatcagcagcgctaccgctatctcatggtcgacgagtac
caggataccaacgccgcccagtacctgctgctgcgctccctggccctggtgcacggcaac
ctgtgcgtggtcggggacgacgaccagtcgatctacggctggcgcggcgccgatctcggc
aatatcctcggcttcgaaaaggatttccccgggacgacggtcatcaagctcgagcagaac
taccgctccaccggcaacatcctcgccgccgccaacgcggtgatcaaaaacaatggccag
cgcaaggaaaaggcgctgtggacctccggggagagcggtcccctcgtcgattacctgtgc
tgcgaagacgccgaggacgaggcccgggaggtggtggaacggattcacggcgcccgtttc
cgccacgatctcgcctaccgggactttgccatcctctaccggaccaacgcccagtcccgg
gccttcgaggaacagctgcgctacgagaacatcccctacgtcctcatcggcggccagcag
ttcttcgaccgcaaggaagtcaaggacaccgtcgcctacttcaaggtgctggtcaacccc
cgggacgaggtcaatctcctgcggatcctcaacttccccaaaagggggattggcgagacg
accgccgacaggctgatccgcgtctcgacggaggagcagcgccctctctgggacgtcctg
cgcgacccgccggggagcgaggagctgggggagaaggcccatcgcgccctcgccgatttc
gtcgccctgatggaggggttccgggcgcgtttttcttccaccgccgatcttgccgccctg
gggcgcgaattcctcgaaaccctgcacatcgaggaggagctctaccgcaccgccgacgat
ccgaaaaaggcgcgccgccgggtggagaacgtcggcgaggtgatcaatgccctggcctcc
taccaggagcgggacgagcagccgaccctggccggttttctctccaaggtctccctcctc
gatcgggacgagccgccgcggggggggaaggacgccaagctggcccaggacgcggtgatc
ctcatgagcctccactccagcaagggactcgaatacccctatatcttcctggtggggatg
gaggagggattcctcccccaccagaagtcggtgggggagcatgtggatgtcgacgaggag
aggcggctgtgctatgtcggcatcacccgggcccggcaggtcctcacgcttctgggggcg
gcgcggcgcaagaagtacggcaagatgctcccccgggagccgagccgttttctcgccgag
atccccgccgaacttctctgcacccagcagagcaaggggcgcccggaggcctccccggaa
gaggaggaggcgatggccagcaattttttctccagcatgaagtccctcctcggggactaa
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