Desulfosarcina sp. BuS5: BuS5_02079
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Entry
BuS5_02079 CDS
T10385
Name
(GenBank) ATP-dependent DNA helicase RecQ
Organism
desb Desulfosarcina sp. BuS5
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
UvrD_C
Helicase_C
AAA_19
ResIII
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WDN89111
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Position
2081421..2086556
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AA seq
1711 aa
AA seq
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MSYELNKILRGGVALDLEINPSDNSLLKIGAIDLLTGDRSLCFKGRFDEGRALNSLDQFC
CNAPFLLGHNISRYDVVWLKKNHPDLNLLSIPLIDTLFLSPLAFPRNPYHRLVKDYKIVK
ESVNDPVADAKAAFTLFIDQVDAFKNMKNSLAGFYGWALSLYFPDDFYGVLFHKITGDQA
TSSLEVRKIWLDLTFEKVCLKRAGEVFDLAVHTPKSAVCLAYALAWVQVAGDNSVLPPWI
RHQFPSIPALLDSLRATPCLQQDCVFCKEHYDLNLNLKRFLGFDNFLPVKNESPSMQKVI
VEEIVRGGSCLAVLPTGAGKSLCYQLPGLMKARQRNQLVLIISPLQSLMKDQVDGLKKKG
IINVGTINGLLTMLERSRTLEDVRMGDIDLLWLAPEQLRNTIVKSVIRQRELGLVVIDEA
HCFSKWGHDFRTDYLYISRFLTEYNSCGASKIPQIVCFTATAKKEVIDEIRTYFKAELDL
ELVIFEGGHERTNLNYQVENVIDSEKAEIIHNILSDVFGEGDVDGGGIIFASTRARVEDF
SRSLGEKGWIVDYFHGGRTPEEKRMVQESFLAGELKVIAATNAFGMGVDKPDIRVVIHAD
IPGSLENYLQEAGRAGRDRKPATCVLLFDPEDLETQFKLNSFSRLEWRDISGFLTGLKHL
AAKNPEKNLVLTSGELLRTDEIDEQNLTDISMDEPMYDTKVKTALAWLEKSGKVLRGDNR
TQVVQGQVMVENMALAREKISGLRLSSKESGNWLRLLEVLFQSDRKELLNTDNLSLVTGI
EPEKLISVIHSMREAGIINHDINMTAYVHKGVADDSLKRFQKYMSIEQSLLSIMEEEHPD
MDSDSFSIIRPGMICRIMNEEKDIKARPDRILLLLELMSQDNLLRRTRTGEDTYKIFFKA
DWLAIKKAVHTRTSVGMVILRHLLAKLSVELRGRDLLVSFRSGELSMALKDDLSTRHLDK
TDEKIKQALLALHTMRAICLQSGLSVFRPAMTIQVTANKNERFTKNEFLPLEEFHKQKII
QVHIIGRYAEYAMETVKKALAFVTSYFSTGKDAFLKIYFDRELKFLEMPTTRTSFNKIVT
ELDSPVQEKAVASPRYKNLLIVAGPGSGKTRIIVHRIAYLIRVKRVMPRHIMALAFNRSA
VTQLKLRLKELIGREAGPVRIRTYHSLALSITGSLKAVRNSDKDNSAFFSGFLKDAVEIL
SEESGLDHGALGWRDTILSGLRYILVDEYQDINELEYRFLSILAGRNEKDSGRRPSLVAV
GDDDQNIYAWQGSNVKFIHGFQKDYDAEIVYMTENYRSSGAIIEASNALISNNKDRMKTT
PIKPSARAEEPAADEKVTIIKSPDPVSTFRAAIELAGDLLAEDLLKTDKSITPSQICILC
RTNKELDTIQIMARNMSIPVKSIRPRRLPLVYTREFLLLLDLLGSCRQQILKPETLNSLI
CGLIQDSGFSKNNIWLGTFRSILENYLAEIAGARLPVGNFIDYIYDAARDPRQLIQADDK
KILLATMHMAKGLEFPVVIIAGQPLMPLIKKGLEDERRLYYVAMTRAMQRLFCLYNDETD
NPFINEITDCGQVTRKTVKPVITEDDKNSLNTLIWELELTDIIISFPAWKKIKKKSQIIL
AGLEPGNSSGLFIKEHDHNYTIYCRTFPIARLSAKGAARYGKLLSEGMTTEKIIFLASIK
WSEEMESDNQETASENRGRWFTGLYQIVMGK
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgagctatgaactgaataaaattctacggggcggggttgctctggatctggaaatcaac
ccgtccgataactcccttcttaaaataggggcgattgatcttttgaccggggatagaagc
ctctgctttaagggaaggttcgacgagggccgggctttaaattctttggatcaattctgc
tgtaatgccccgtttctcctggggcacaacataagccgttatgatgttgtctggcttaaa
aaaaatcaccccgatcttaatcttttatccattccattaatcgataccctctttttatct
cccctggcttttccacgaaatccataccaccggcttgtaaaagactataaaatcgtcaaa
gaatccgtcaatgatccggttgcagatgcaaaggccgctttcacactctttattgatcag
gtagatgcctttaaaaatatgaaaaacagtctggccggtttttacggctgggcgctttcc
ctctattttcctgatgatttttatggggtcctgtttcacaaaataaccggcgatcaagcc
acttccagtttggaggtgcgcaagatatggctcgatttaacttttgagaaagtttgcctt
aaaagggcaggggaggtgtttgatcttgcggtgcatactccgaaatcggctgtatgtctt
gcttatgccctggcctgggttcaggtagccggtgacaattcggtcttgccgccctggata
aggcaccagtttccgtcaattcccgctttactcgattctcttcgagcaacaccctgcctg
cagcaggattgcgttttttgtaaagaacattatgaccttaacctgaatttaaaacgattc
ctcgggtttgacaattttttgcctgtaaaaaatgaatctccttcaatgcaaaaggtaata
gtggaagagatcgtgcggggcgggagctgtctggcggtgctgccgaccggcgcgggcaag
tctttatgctatcagcttccgggcctgatgaaggccaggcagcgcaatcagctcgttctg
attatatctccattgcagtccttgatgaaagaccaggttgacgggcttaaaaaaaagggg
attatcaatgtcggcacaatcaacgggctgctcaccatgcttgaaaggagccgcaccctg
gaagacgtccgcatgggcgacatagatcttctctggctggctcctgaacagttgcgcaac
accatcgtcaaatctgttatcaggcaaagggaactcggcctggtggtgattgatgaggcc
cactgcttttcaaagtggggacatgatttcaggaccgattatctttatatatcccgtttt
ctgactgaatataattcttgcggcgcttccaaaattccccagatagtctgttttaccgca
accgcaaaaaaagaggttatagatgaaatccgtacttattttaaagctgaactcgacctg
gagcttgttattttcgaaggcggtcatgagagaacaaacctgaattatcaggtggaaaat
gtcatcgacagtgaaaaagccgaaatcatccataatattttatcggatgttttcggggaa
ggggatgttgacggcggtggtattattttcgcttccacccgcgccagggtggaagatttc
agccgaagcctgggggaaaaaggatggatagtcgattatttccacggcggccggacaccc
gaagagaagcgcatggtgcaggaaagttttttggctggggaactcaaggttatagcggct
accaacgctttcggaatgggggttgataagccggatataagggtggtgattcatgcagac
attcccggttccctggaaaattacctccaggaggcgggcagggcagggcgtgaccggaaa
cctgcgacttgcgtgctcctctttgatcccgaggaccttgagacccagtttaaacttaat
tcattcagccggcttgaatggcgtgatatcagtggttttcttacgggtttaaaacatctt
gctgccaaaaatccggaaaaaaatctggtgcttacaagcggtgaacttttaagaacagat
gaaattgatgagcagaacctgaccgatatctccatggatgagccgatgtatgacaccaag
gtaaaaaccgccctggcctggctcgaaaaaagcggcaaggtgttgagaggagacaaccgg
acccaggttgtccagggacaggtaatggtcgaaaacatggctctggccagggagaaaata
tccggactccgtttatcctcaaaagaatctggaaactggctcagactgttggaggttctc
tttcagagtgatcggaaagagctgttaaataccgataatctgtctctggtaaccggcatt
gagcctgaaaaactgatttccgtcatacattccatgcgtgaagccggaatcattaatcat
gatatcaacatgacagcctatgttcacaaaggcgttgcagatgattccctgaaacgtttt
cagaaatatatgagcattgagcaatcattattatccattatggaagaagaacatcctgat
atggattcagacagcttctcgattataagacccggcatgatctgcaggatcatgaatgaa
gaaaaggatattaaggcccggccggacaggattctgctgctgctggaacttatgagccag
gataatcttttgcgccgtacaagaacaggggaggatacctacaaaatatttttcaaagca
gactggctggctataaaaaaggcggttcatacaagaacgtcggtcggcatggttattctg
cggcatcttctggccaaactttccgtggaactccggggccgggatctgctggtttcgttc
cgaagcggcgaactgagcatggcattaaaagatgatctttccaccaggcacctggacaag
accgatgagaaaataaagcaggctctgctggcgctgcatacaatgcgcgccatctgttta
cagagcggtttgagtgtattcagaccggccatgacgatacaagtaacagcgaacaaaaac
gaaagatttaccaaaaacgaattcctgcccctggaagaatttcataagcaaaaaatcatc
caggtacatataatcggcagatacgcagaatatgcgatggagaccgtcaaaaaggcgttg
gcgtttgttacaagttatttctcaaccggaaaagacgcttttttaaaaatttattttgac
agagaattaaaatttctggaaatgccgaccacccggacatcatttaacaaaatagtcaca
gaacttgatagtcctgttcaggaaaaagcggttgcctcgccccgttataaaaatctgctg
atcgtggccggtcccggttccggcaaaacccgtattatcgttcacaggatagcatatctt
atccgtgtcaaaagagttatgccgcggcatattatggccctggcttttaacagaagcgca
gtgacccagcttaagctgcgactgaaagaattgatcggccgtgaagccggtccggtgcgc
atccggacctatcacagcctggctctctcaataacaggcagtttaaaagcggtccgaaat
tcagataaagataattccgcctttttcagcggttttcttaaagatgcggtggagattctg
tcggaagaatcgggtctggatcatggagccctgggatggagagataccatcctttcaggg
ctccgttatatcctggtggatgaataccaggatatcaacgaacttgagtatcgtttttta
tcaattctggccggccggaatgaaaaagatagcggccgccggccaagtcttgtggcggtc
ggcgacgacgatcagaacatctatgcctggcagggatcgaatgtaaaatttattcacggc
ttccaaaaggattatgatgccgaaatcgtctatatgacggaaaattaccgatcttccggg
gcgattattgaagcctccaatgctttaatttcaaacaataaagaccggatgaaaacaacc
cccataaaaccgtctgccagggcggaggaacctgctgcagatgaaaaggttacgatcatc
aaaagccctgacccggtctcaaccttccgggctgccatagagctggcaggagatttgctg
gcagaagatctcctgaaaaccgataaatcgataacaccttctcaaatatgtatcctctgc
cgcaccaacaaagagctcgacacaattcagataatggcccgcaatatgtccatcccggta
aaaagcattcgcccgagaaggctaccgcttgtttataccagggagttccttttgctgctg
gatcttctgggctcctgccggcagcagatcctgaagcctgaaacattaaacagccttata
tgcgggctgattcaggatagcggtttttccaagaataatatctggctcgggactttcaga
tctatcctggagaattatctggctgaaatagcaggcgcacggctgcctgtgggaaatttt
attgattatatttatgatgccgcccgggatccccggcagttgattcaggcagatgataaa
aagatcctgctggccaccatgcacatggccaaggggctcgaatttcccgtggtcattatt
gccggtcagccccttatgccccttataaagaagggtctggaggatgaaagacgcctttac
tatgttgccatgactcgtgccatgcagcggcttttctgcctgtataatgatgaaaccgat
aacccttttatcaatgagatcacggattgcggccaggtaacccggaaaacagtaaaaccg
gtaataacggaagacgacaaaaattcattaaacactttaatttgggaacttgaacttact
gatattataatatcttttcctgcgtggaaaaaaattaaaaaaaagtcccaaataattttg
gcaggacttgaaccgggtaactccagcggcttgttcataaaagaacatgaccataactat
acaatctactgccggacttttcccatagcgcgactttccgccaaaggcgccgcaaggtac
ggaaagcttctgtcggaaggaatgacaacagaaaagatcatttttctggcttcaataaaa
tggagcgaggagatggaatcagacaaccaggagaccgccagcgaaaatagaggccgatgg
tttaccggcctgtatcagatagtgatgggcaaatag
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