Desulfosarcina sp. BuS5: BuS5_02286
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Entry
BuS5_02286 CDS
T10385
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
desb Desulfosarcina sp. BuS5
Pathway
desb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
desb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BuS5_02286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
desb03019
]
BuS5_02286
03009 Ribosome biogenesis [BR:
desb03009
]
BuS5_02286
Enzymes [BR:
desb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BuS5_02286
Messenger RNA biogenesis [BR:
desb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BuS5_02286
Ribosome biogenesis [BR:
desb03009
]
Prokaryotic type
rRNA helicases
BuS5_02286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Helicase_RecD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WDN89318
LinkDB
All DBs
Position
2302105..2303784
Genome browser
AA seq
559 aa
AA seq
DB search
MSFENLDLIDELLQAVNELGFIEPTPIQTDAIPEIIGGERDLVGLAQTGTGKTAAFGLPM
IQLIDFDLKHTQGVVICPTRELCLQISADIKKLCKYVNNAKVAAVYGGASIETQRNQIKK
GAQIIVATPGRLLDLINKKIAKLYQVSYLVLDEADEMLNMGFQEDIDAILKNTPAQKRTW
LFSATMPHEVAKIAKKYMKNPVEITIGKKNSGAENIAHVNYIVKEKDRYQALKRIIDYYP
DIYGLVFCRTRKDTQEVAEKLIKDNYNADALHGDLSQGVRDKVMGRFKTKSLQILIATDV
AARGIDVQNITHVINYKLPDEAQNYTHRSGRTARAGKSGTSIAIINSREKSKLQFIQKKA
GVKFNYAKVPEGYAICEKQLYFMINKMVEVKVDHKAIGRFLPPVYNTLSDLTKEELIQKF
VSIEFNRFLYYYKGSKDINVSLTTKKDAHRPAKKRRQQKGLEPGKSKRFFLNKGSKDNLQ
KGAVIRTLCSRAGISSENIGAIEIMRECSFFEVETNVADNVLKSMKDAKIDGRKIQVEYA
ENKKSQTKRSKKSKKRKKR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgaaaatttagatttgatagacgagttattacaagcagttaatgaactagga
tttattgaaccaacgcccatccagacagatgcaattcctgaaattattggaggggagagg
gatcttgtaggacttgcccagaccggaacagggaaaacagcagcttttggtttgcccatg
atccagctaattgattttgatctgaaacatactcaaggggtggtgatttgccccaccagg
gaactctgtttgcagatttcagctgatattaaaaaattatgcaaatatgtaaacaatgca
aaggttgctgccgtttatggcggcgccagcattgaaacacagaggaatcagatcaaaaaa
ggtgctcagattattgtggcaacaccaggtagattacttgatcttattaataaaaaaata
gcaaagctttatcaagtctcatatctggttcttgatgaagcggatgaaatgctaaatatg
ggatttcaggaagatatagatgccattcttaaaaatacgccggctcagaaaagaacctgg
ctgttttcagcaacaatgccccatgaagttgcaaaaattgcaaaaaaatatatgaaaaat
ccggttgagataaccataggaaagaaaaatagtggggcggaaaatattgcgcatgttaat
tatatcgttaaagaaaaagacaggtatcaggcgttaaaacgaattattgattattacccg
gatatttatggccttgtgttttgtcgcacgcgaaaagatacacaggaagtagcagaaaaa
ctgatcaaagataactataatgcggacgcccttcatggtgacctttcccagggagtacgc
gacaaagtcatgggcagatttaaaaccaaatcccttcagattcttattgcaacagatgtt
gctgctcgcgggatagatgttcagaatataacccatgtcataaactataaactccccgat
gaggcgcaaaactatactcacaggagcggcagaactgcaagagcggggaaatcaggaacc
tccatagccattatcaactccagggaaaaaagcaaacttcagtttatacaaaaaaaggca
ggagttaaatttaattatgcaaaagtcccggaaggatatgcaatttgtgagaaacagctc
tatttcatgattaacaaaatggtagaagttaaagtggatcataaagcaatcggacgtttc
ctgccgccagtatataatacattaagcgaccttacaaaagaagagctcattcaaaagttt
gtttcaattgaatttaaccgctttctttactattataaaggttccaaagatataaatgta
tcattgacaacaaaaaaagatgctcatcgtcctgcaaaaaaaagacgacaacaaaaaggt
ttagaacctggaaaatcgaaacggttttttctaaataaaggatccaaggacaatctacaa
aaaggcgctgttataagaactctatgcagcagagctggaattagctctgaaaatattggt
gcaatagaaatcatgcgggaatgttctttttttgaagttgaaacaaatgttgcggataac
gtgttaaaatcaatgaaagatgcaaaaatagacggccgaaagattcaggttgaatatgcc
gaaaataagaaatcgcaaaccaaacgatctaaaaaaagtaaaaagagaaaaaaacgttaa
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