Desulfomicrobium sp. ZS1: NLA06_00490
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Entry
NLA06_00490 CDS
T08898
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
desu
Desulfomicrobium sp. ZS1
Pathway
desu03030
DNA replication
desu03430
Mismatch repair
desu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
desu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLA06_00490 (dnaE)
03430 Mismatch repair
NLA06_00490 (dnaE)
03440 Homologous recombination
NLA06_00490 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
desu03032
]
NLA06_00490 (dnaE)
03400 DNA repair and recombination proteins [BR:
desu03400
]
NLA06_00490 (dnaE)
Enzymes [BR:
desu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NLA06_00490 (dnaE)
DNA replication proteins [BR:
desu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NLA06_00490 (dnaE)
DNA repair and recombination proteins [BR:
desu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NLA06_00490 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UTF50394
LinkDB
All DBs
Position
104145..107600
Genome browser
AA seq
1151 aa
AA seq
DB search
MSGFTHLHCHSEYSLLDGAIRLKDLCARAVDFGFSSAAITDHGNLFGSVPFYLEAKKHGI
KPIIGSEVYIADDMFERENKKRFHLVLLAQNLIGYHNLVKIVSAGFLEGFYYKPRVDKKY
LRAHSEGLICLSACLQGEVPYALRHGTFDSALLKAREYMEIFPDRFYLELQSNGLKEQEV
VNDRLMELAKETGLPLVATNDCHYLDKDDYEAHDILLCVGTGKIASEKQRLKFDTNEFYY
KAPEEMEAAFAHCPEAVENAGRIADMCEVELTLKQHFFPVYDVPEGVTLDQEFRRLSEEG
LKERIAALPYEVDESVYRERLELELGVIIEKGFPAYFLIVQDFINWAKSKSIPVGPGRGS
AAGSLVSYALRITDLDPIRYALFFERFLNVERASMPDIDVDFCYNRRDEVIKYVSEKYGA
DHVAQIVAFGTMKAKGAIRDVARALDVSLKDADRIAKLIPDDLKMTLTKALDEEPELRNL
IDSDPQFKKLYDVARRLEGLARHSSIHAAGIVISQKPMVEYLPLHKGKNGEVVTQLDMKK
VELIGLIKFDFLGLKTLTVIDDALKLIRKNNKPVPILEKLPLDDPQTFELLCRGETDGVF
QLESDGMRRVLRGLKPSCFEDIIALLALYRPGPLESGMVDDFIGRKHGLRKVEYEFEELA
PVVHPILEDTYGVILYQEQVMKIASDLAKYSLGEGDNLRRAMGKKDPAEMAKQRVRFLDG
ARENNISQEAAEYIFDLMEKFAGYGFNKSHSAAYAVISYQTAYVKAHYPAEFMAAIITSE
VSNTDKILAHVSACRDMDIEVLPPDVNRSFNEFTVEGESIRYGLSGIKGVGEGAVESIEE
EREKGGDFTSLLDFCQRVNLRKVNKRVLDSLIKSGAMDSFGCSRRALLEGLDKVQAMAQK
RAKRKTSGQLSFMGMVEENTCNLTGLGIEDEEAVLPEFGDDEKCRMEKEAFGFFLIGHPL
QPFRQEIRRLGYPSLAQCADMTEKSPVQVPVLVTSMKTINTKKGDRMAFCGIEDLSGSGE
AIVFSEPYVTYRELLTCEEPLLMTGVVAKRDSMNEESEDGPKKSKILAESFKLLSEVVGS
GTEPVVLFVRANGKDPDWIGLGEIVKRYPGQAPVQVDLARGEYVCRLQFGPDFMVAPCPD
FWRDFEQWRQI
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtttcacccatctgcattgccattccgagtacagccttcttgacggcgccatt
cgcctgaaagacctgtgcgcccgggccgttgatttcggcttttcatcggccgccattacc
gaccatggcaatctcttcggctccgtacccttctaccttgaggccaagaagcacggcata
aaacccatcatcggcagcgaggtctacatcgccgacgatatgttcgagcgggaaaacaaa
aagcgctttcaccttgttcttctggcccagaatctcatcggctatcacaatctggtcaag
atcgtgtccgccggtttcctggaagggttttattacaagccccgggtggacaagaaatac
ctgcgcgcccatagcgagggccttatctgcctgtcggcctgcctgcagggcgaagtgccc
tatgccctgcgccacgggaccttcgacagcgcccttttgaaggcgcgcgaatacatggag
atttttccggaccggttttacctggagctgcagtccaacggcctcaaagaacaggaagtg
gtcaacgacagactcatggaactggccaaggagaccgggctgcctctggtagccaccaac
gattgccactatctggacaaggacgattacgaggcccacgatatcctcctgtgcgtgggc
acaggcaagatcgcctcggaaaagcagcgtctcaaattcgacaccaacgaattctactac
aaggccccggaagagatggaggctgcctttgcccattgccccgaagccgtggaaaatgcg
ggtcgtattgcggacatgtgcgaggtggagctgacgctcaagcagcatttctttccggtc
tacgacgtgcccgaaggcgtgaccctggatcaggaattccgccgcctgtccgaagagggg
ctgaaggagcgcatcgcggccctgccttacgaggtggacgagtccgtttaccgcgagcgc
ctggaactcgaacttggcgtcatcatcgagaagggctttccggcttattttctgatcgtg
caggacttcatcaactgggcgaaatcaaagagtatcccagtcggtcctggccgtggatcg
gcggccgggtcgctggtctcgtacgcgctgaggatcacggacctggatcccattcgctac
gcgctcttcttcgagcggtttttgaatgtggagcgtgcgtccatgcctgatatcgacgtg
gacttctgttacaaccgtcgcgacgaggtcatcaaatacgtctcggaaaaatacggggcc
gaccatgtggcccagatcgtggccttcgggaccatgaaggccaagggcgccatccgcgac
gtggccagggcccttgatgtcagtcttaaagacgccgatcgtatcgccaagctcattccc
gacgacttgaagatgaccctgaccaaggccctggacgaagagccggagctgaggaatctc
atcgacagcgatccgcagttcaagaagctttacgacgtggctcgccgtctggagggcctg
gcccggcattcgtccatccacgccgccggcatcgtcatttcccagaagcccatggtcgag
tacctgcccttgcacaagggcaagaacggggaggtcgtgacccagctcgacatgaagaag
gtagagcttatcggcctgatcaaattcgactttctgggtcttaaaaccctgaccgtgatc
gacgatgccttgaagctcattcgcaagaacaacaagcccgtgccgatcctggaaaagctg
cccctcgacgacccgcagaccttcgaactcttgtgccggggtgagacggacggcgtgttc
cagctggaatccgacggcatgcgccgggtgctgcgtggcctcaagccttcctgcttcgag
gacatcatcgcgcttttggccctgtaccgcccggggccgctggaatccggcatggtcgac
gacttcatcggccgcaagcacggcctgcgcaaggtcgagtacgaattcgaggagctggcc
ccggtggtccaccccattctggaggatacgtatggggtcatcctgtaccaggaacaggtc
atgaagatcgcctcggacctggccaagtattctctgggcgagggcgacaacctgcgccgg
gccatgggcaagaaggatccggcggagatggccaagcagcgggtgcgttttctggacggc
gcgcgcgagaacaacatttcccaggaggccgccgaatacatcttcgacctcatggagaaa
ttcgcgggctacgggttcaacaaatcccacagcgcggcctacgcggtcatctcctaccag
accgcctacgtgaaggcccattacccggccgagttcatggccgccatcatcacctcggaa
gtgtccaacaccgacaagatcctggcccatgtcagcgcctgccgggacatggacatcgaa
gtcctgcccccggacgtgaaccggagtttcaacgaattcaccgtcgagggcgagtccatc
cgctacggtctttccggcatcaagggcgtgggcgagggggctgtcgagtccatcgaggag
gaacgggagaagggcggggatttcaccagtctgcttgatttctgccagcgcgtgaatctg
cgcaaggtcaacaagagggtgctcgactccctcatcaagtcgggagccatggacagcttc
gggtgctcgcggcgggcgctgctggagggcctcgacaaggtccaggccatggcccagaag
cgggccaagcgcaaaacctccggccagctctcgttcatgggcatggtggaagagaacacc
tgcaatctgacggggctgggcatcgaggacgaagaggccgttctgccggaattcggggat
gacgagaaatgccgcatggagaaggaggctttcggattcttcctcatcggccatccgttg
cagcccttccgccaggagatcaggcggctcggctatccgtccctggcgcagtgcgcagac
atgacggagaagtcgcccgtgcaggtgcctgtcctggtcacgtcgatgaagaccatcaat
accaagaagggcgaccgcatggccttttgcggcatcgaggatctgagcggttcgggcgag
gccattgttttttcggagccgtacgtgacctaccgtgagctcttgacctgcgaggagccg
ctgctcatgaccggcgtggtggccaagcgcgattccatgaacgaggagagcgaggacggg
cccaaaaagtccaagatcctggccgagtccttcaagctgctctcggaggtggtcgggtcg
ggcacggagccggtggtcctttttgtgcgcgccaatggaaaggatcccgactggatcggg
ctgggggagatcgtcaagcggtatccgggacaggccccggtgcaggtcgatcttgctcgc
ggggaatatgtgtgccgactgcaattcggcccggacttcatggttgcgccgtgtccggat
ttttggcgggattttgaacagtggcggcagatctga
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