Desulfomicrobium sp. ZS1: NLA06_00540
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Entry
NLA06_00540 CDS
T08898
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
desu
Desulfomicrobium sp. ZS1
Pathway
desu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
desu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLA06_00540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
desu03019
]
NLA06_00540
03009 Ribosome biogenesis [BR:
desu03009
]
NLA06_00540
Enzymes [BR:
desu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NLA06_00540
Messenger RNA biogenesis [BR:
desu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLA06_00540
Ribosome biogenesis [BR:
desu03009
]
Prokaryotic type
rRNA helicases
NLA06_00540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
DUF5724
CMS1
AAA_30
P-loop_SecA
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UTF50404
LinkDB
All DBs
Position
complement(119006..120598)
Genome browser
AA seq
530 aa
AA seq
DB search
MTTFSELGLSELSIQALARKGFEEPTPIQIKTIPAVLTGDSDIVAQAQTGTGKTAAFGLP
LLEMLDPDIRTVQALVLAPTRELAIQVAEEVNSLRGGRTINVAPIYGGQSMEIQLRSLKK
GVSVVVGTPGRVLDHLRRGSLNLSGIRFLILDEADEMLNMGFLDDVLEIMEQTATEKRTM
LFSATMPPEILRIAKKYMGDYQIIKAVSEQLTATQTDQIYFEVAMSDKFEALCRIIDMEP
DFYGLVFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTILVATDV
AARGIDVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSEYRRLQFISKHA
RTDIRKARLPKVSDVINMKKGRIRAELQEIMTTEPELEFMGMAQELLDQSKPRETLAALL
QYMFQEELDASNYKEIGDAFVVDKTGKTRLFVTQGRKDGMTPKRLLTFLGDKCNIPPKKI
WDIQIMETFAFVSLPFQDAERVLAMFNKGKGTELAFTKAKARPSAPAPRR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgactacattttctgaattaggcttatccgaactgagcatccaggctctggcccgcaag
ggttttgaagaaccgactcccatccagatcaagaccatcccggccgtactgaccggcgat
agcgacatcgtggcccaggcccagaccggcacgggcaagaccgcggcctttggcctgccg
ctgctcgaaatgctggacccggacatccggacggtacaggcgctggtgctcgcccccacc
cgcgaactggccatccaggtcgcggaggaggtcaactccctgcgtggcggccggaccatc
aatgtcgcccccatctacggcggccagtccatggagattcagcttcggagcctcaagaaa
ggggtgtccgtggttgtcggaacaccgggccgcgtgctcgaccatctgcgccggggcagc
ctgaatctctccggcatccgctttctcattctcgacgaagcggacgaaatgctgaacatg
ggctttctggacgacgtgctggaaatcatggagcagacggccaccgaaaagcgcaccatg
cttttctccgcgaccatgccgcctgaaatcctgcgcatcgccaaaaaatacatgggcgac
tatcagatcatcaaggctgtctccgagcagctcacggctacccagaccgaccagatctac
ttcgaggtcgccatgagcgacaaattcgaggccctgtgccggatcatcgacatggagccg
gacttctacggacttgtcttcacccgcaccaagatcgacgccgacgccgtatcccagcgt
ctgatggaacgcggctacgaggccgacaccctgcacggcgacatgtcccagagcctgcgc
gaaaagatgctgatcaaattcaaaaagaagctggtcacgatcctggtcgccaccgacgtg
gccgcgcgcggcatcgacgtgcatgacctgacccacgtcatcaatttcgatctgccccac
gatccggaagcctacgtgcaccgcattggccgcaccggacgcgccggcaagcagggcatc
gccatcaccttcatcacgccctcggagtaccgccgcctgcagttcatcagcaagcacgcc
cgcacggacatccgcaaggctcggctgcccaaggtctccgatgtcatcaatatgaagaaa
ggccggatccgggcggagctgcaggagatcatgactacggagccggagcttgagttcatg
ggcatggcccaggagctcctcgaccagagcaagccccgcgaaaccctggccgccctcttg
cagtacatgtttcaggaagagctggacgcctccaactacaaggagatcggcgacgccttc
gtggtcgacaagacgggcaagacccgcctcttcgtgacccagggccgcaaggacggcatg
acgcccaagcgcctgctgaccttcctgggcgacaagtgcaacatcccgcccaagaaaatt
tgggacatccagatcatggaaaccttcgcctttgtttcattgcccttccaggatgccgag
agggtcctggctatgttcaacaagggcaaaggcaccgagcttgccttcaccaaggccaaa
gcccggcccagcgccccggcccccagaagatag
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