Desulfomicrobium sp. ZS1: NLA06_00565
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Entry
NLA06_00565 CDS
T08898
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
desu
Desulfomicrobium sp. ZS1
Pathway
desu03420
Nucleotide excision repair
desu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
desu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NLA06_00565
03430 Mismatch repair
NLA06_00565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
desu03400
]
NLA06_00565
Enzymes [BR:
desu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLA06_00565
DNA repair and recombination proteins [BR:
desu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLA06_00565
MMR (mismatch excision repair)
Other MMR factors
NLA06_00565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
RecR_HhH
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UTF50409
LinkDB
All DBs
Position
complement(125439..127613)
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AA seq
724 aa
AA seq
DB search
MRIDYQNDLNPAQYEAATTLDGPVLVIAGAGSGKTRTVVYRLARLVESGVSPAEILLLTF
TRKASSEMLHRAGGLLGHQGLGHVRGGTFHGFAYSLLKQYAGLLGFERGATVMDRSDAEE
ILSQAKDRLKIGKGDRKFPKRATIIGLYSKSRNKELSLEQVLRQEAYHLGSYEDDLRRLL
EEYERIKHECGLLDYDDLLFLLERLLTEHAQVREAVTSSISHIMVDEYQDTNLVQARLVG
LLTRPGDTSPNVMAVGDDAQSIYAFRGANVKNILDFPKTFPGTRLIKLEQNYRSTQPILE
LTNAILDGFREKFAKRLFSERTDSRLPEHVLPFSDRSQARLVAAKVVELSRTYALDQIAV
LFRAGYQSYHVEVELNKIGLGFRKYGGIKFSEAAHIKDVLACLRLAQNTSDIPAWQRILG
NVPGIGPKSAQKIHHAAMINDQAFIKAQRAKRPALDDLLRVLDTLRTQVMRPSTAITFVL
EYYLPVLREKFPDDYPRREAGLEELVQISLSYDDTASFLGDLSLDSPDAEEERGQAVTLS
TVHSAKGLEWDAVLVIDLVEDRFPSRHAMNDNDDFEEERRLMYVACTRARDSLTLFSPET
LYSRELSATTPARVSPFLQDIPAHLLSRYREQFTGGVGLQTLPTPRRTSESTSAHISRPG
PGEDFAAPAPRPASSTQTPVQGTYCRHKIFGRGKVVQRVEPNKYKINFPGFGLKLIIEDF
VELE
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgactatcagaacgacttgaatcccgcccagtacgaggccgcaaccaccctt
gacgggcccgtcctggtcatcgccggagccggttcgggcaagacccgcaccgtggtctac
cgcctggccaggctagttgaatccggagtatccccggccgagatcctgcttttgaccttc
acccgcaaggcctcctcggagatgctgcaccgcgcgggaggcctgctggggcatcagggt
ctgggacacgtgcgcggcggcaccttccacggcttcgcctattccctgctcaagcagtat
gcgggcctgctgggcttcgagcgcggggccacggtcatggaccgctccgatgcggaagag
atactgagtcaagccaaggaccgcctgaagatcggcaagggcgaccgcaaattccccaaa
agggccacgatcatcgggctctacagcaaaagccgcaacaaggagctctccctggagcag
gtgctgcgccaggaagcctatcatctgggctcctacgaggacgacctgcgccgactgctc
gaagaatacgagcgcatcaagcacgaatgcggactccttgactacgacgacctgcttttt
ctgctggaacgcctcctgaccgagcatgcgcaggtccgcgaagccgtgacctcgtccatc
tcccacatcatggtcgacgagtaccaggacaccaacctcgtgcaggcgcggctggtcggc
cttctgaccaggcccggcgacacgagccccaacgtcatggccgtgggcgacgacgcccag
tccatctacgcctttcgcggcgccaacgtgaaaaacatccttgatttccccaagaccttt
cccggcaccaggctcatcaagctggaacagaactaccgctcgacccagccaatcctggaa
ttgaccaacgccattctggacggtttccgcgagaagttcgccaaacgcctcttttccgag
cgcacggactcgcgtctgccggagcatgtgctgcccttctcggaccgcagccaggcccgc
ctggtcgcggccaaggtggtggaactgtcccgcacctatgccctggaccagatcgcggtc
ctgttccgggccggatatcaatcctaccatgtggaagtggagctgaacaagatcgggctc
ggctttcgcaaatacggcgggatcaaattctccgaagccgcgcacataaaagatgtcctg
gcctgcctgcggcttgcccagaacacgtcggacatcccggcctggcagcgcatcctcggc
aatgtgccgggcatcggccccaagagcgcgcaaaaaatccaccacgcggccatgatcaac
gatcaagccttcatcaaggcccagcgcgccaagcgtccggctctcgacgacctgctgcgc
gtgctcgataccctgcgcacccaggtcatgcgcccgtccacggccatcaccttcgtgctc
gaatactacctgcccgtgctgcgcgaaaaattccccgacgactacccgcgccgcgaagcg
ggcctcgaagaactggtccagatctccctcagctatgacgataccgcctcctttctgggc
gacctgagcctggacagccccgatgccgaggaggagcgcggccaggccgtgaccctgtcc
acggtgcattcggccaagggcctggagtgggacgcggtgctggtcatcgacctggtggag
gaccgtttcccgtcccgccacgccatgaacgacaacgacgacttcgaggaggagcgccgc
ctcatgtacgtggcctgcacccgcgcccgcgacagcctgaccctcttctcccccgagacc
ctctacagccgcgaactctccgccaccaccccggcccgggtcagccctttcctgcaggac
atccccgcccatctgctgagccgctaccgcgagcagttcacgggcggcgtgggcctgcag
accctgcccacgccccgacgcacgtcggagagcacatcggcccatatttcgcgcccggga
ccgggcgaagatttcgcggccccggcgccacggcccgcatccagcacccagaccccggtg
cagggcacctactgccgccacaagatcttcggccgcggcaaggtggtccagcgcgtggaa
ccgaacaagtacaagatcaacttccccggattcgggctgaagctcatcatcgaggatttc
gtggaactggaataa
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