Desulfomicrobium sp. ZS1: NLA06_10060
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Entry
NLA06_10060 CDS
T08898
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
desu
Desulfomicrobium sp. ZS1
Pathway
desu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
desu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLA06_10060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
desu03019
]
NLA06_10060
Enzymes [BR:
desu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NLA06_10060
Messenger RNA biogenesis [BR:
desu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLA06_10060
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Shikimate_DH
DNA_pol3_delta
Motif
Other DBs
NCBI-ProteinID:
UTF48924
LinkDB
All DBs
Position
complement(2301891..2303225)
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AA seq
444 aa
AA seq
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MDFSSFSFDQRLNVGIRDCGYVTPTPIQIQAIPSVLAGKDVLGLAQTGTGKTAAFALPLL
QRMINDGISVRGPVRVLVLAPTRELALQIHETFISLGKQTGIRSAAVFGGVGETPQVKAA
RQASVLVACPGRLLDLVNRGLVDLSHVNALVLDEADRMFDMGFLPDLRRIMAKLPAKRQN
LLFSATMPPEIRKIADQVLVQPSVVQVSNTAPPEKIRHTLLPVSAGQKMGLLEAYLGRTP
HDCVLIFTRTKHRAKSLARKLEQKGMLATSLQGNLSQNRRQEALEGFRSGKYRIMVATDI
AARGIDCVRISHVVNFDLPDTAESYTHRIGRTGRADKSGEAITLVTPEDSAQINAIERIL
GGRLERVRLEGFAYSSGGDEASFEEPRPARAPGRTPGRNAPSGRSGRPAPRNTSDSRSPA
GRSGNPRRSSSPGRGVFGVASAAS
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtggatttttcctctttttcttttgaccagcgtttgaacgttggcatccgtgactgcggc
tatgttacccccacccccattcagattcaggccattccttcggtgctcgccggcaaggat
gttctcggtctggcccagaccggcaccggcaagaccgctgccttcgcgttgcccctcttg
cagcgcatgatcaatgacggaatttccgtgcgcggcccggtgcgcgtgcttgttctggct
ccaacccgcgagcttgccctgcaaattcacgaaaccttcatttctcttggcaaacagacc
ggcatccgctccgcggcggttttcggcggtgttggtgaaactccgcaggtcaaggccgcc
cgtcaggcgagcgtcctggtggcatgccccggacgtttgctggatctcgtcaatcgcggc
ttggtcgacttgtcacatgtgaatgccttggttctcgacgaagcggaccgcatgttcgac
atgggctttttgccggacctgcgccggatcatggccaagttgccggccaaacggcagaat
ctgcttttttccgcgaccatgccccccgagatccgcaagatcgccgatcaggttctggtt
cagccctcggtggttcaggtctccaatacggctccgcccgaaaagatccggcataccctc
ctcccggtctccgccgggcagaagatgggcttgcttgaagcgtatctgggcaggactccg
catgactgcgtgctcatcttcacccgcaccaagcatcgcgccaagagcctggcccgcaag
ctggagcagaaagggatgcttgcgacatccttgcagggcaacctgtcccagaatcgcaga
caggaagccttggaaggtttccgcagcggcaaataccgcatcatggtcgccacggacata
gcggctcgcggcatcgattgcgtgcgtatttcccatgtcgtcaattttgatctgccggat
acggccgagagctatactcaccgtatcggacgcaccggccgcgccgacaagagcggcgag
gccataaccctggtcacgccggaagactccgcccagatcaatgccatcgagcgcatcctg
ggtggccgtctggagcgggtgcgtcttgaaggttttgcctattcaagcggcggcgacgag
gcttcctttgaagaaccgcgtcctgcccgtgcgcccggcagaactcccggccgcaatgcc
ccttccggcagatcaggacggcctgcgccgagaaatacctccgattcgcgctctcctgcc
ggacgttccggcaacccccgccgttcaagctccccgggacggggcgtattcggagtggcg
tcagccgcatcctga
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