Desulfomicrobium sp. ZS1: NLA06_13640
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Entry
NLA06_13640 CDS
T08898
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
desu
Desulfomicrobium sp. ZS1
Pathway
desu03410
Base excision repair
desu03430
Mismatch repair
desu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
desu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NLA06_13640 (recJ)
03430 Mismatch repair
NLA06_13640 (recJ)
03440 Homologous recombination
NLA06_13640 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
desu03400
]
NLA06_13640 (recJ)
DNA repair and recombination proteins [BR:
desu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NLA06_13640 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NLA06_13640 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NLA06_13640 (recJ)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UTF49595
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Position
3079325..3081049
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AA seq
574 aa
AA seq
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MADTQADWKLKTPAPEAELNVAQQRGIAERLEVSPLLVHLMSLRGLASESDMDKFLSPGL
RYLHPLDKWPGIEAGAALICAAVKENRRIAVWGDYDVDGITATTLVKDFMARRGVEISHY
IPDRLDFGYGLHVDGIRELAAQGVGLLLTVDCGIANIDEIREAKTLGMHVIVTDHHLPGQ
DLPEAEVIINPKLEGWPTPNLAGVGVAFLLMGAVNRLLPGAAVDIRDFLDLVALGTVADV
VPLDEQNRILVKNGLLLIKEGRRPGIQALKEISGLGPDDNVGTGSIGFALAPRINAAGRI
GDPDLAVRMLLATDPEEARQLATKLDKLNAKRKLEEQRILEEAITQAESQLHLPGLVLHS
EHWHSGIIGIVASRIVERFHRPCLILTKENGIFKGSGRSTPSFDLYQALLSCKQCLYKFG
GHRQAAGLKLEPFQLANLKNLFAWAVEEQLGANPAPPVLELDAELPFALITATLLKELEL
LQPYGQGNPRPIFLSPPLSILKHRFFSQKKHLELHLSDSSDGTNMRAVAWRQGERWQDAS
FTGKQIKIAYTPRLSKFNGLQQIELAVQDILSLE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcagatacccaggccgactggaaactcaaaactcctgcccccgaagcagagcttaac
gttgctcagcaaagaggcatagccgaacggctggaagtgagccccctgctggttcacttg
atgtccctgcgcggcctggccagtgaatccgacatggacaaattcctgagccccggactt
cgctacctgcatccgctggacaaatggcccggcatcgaagcaggagcagccctgatctgc
gctgcggtaaaagaaaaccgcagaatcgcggtctggggcgactatgatgtggacggaatt
accgccacaacgctggtcaaggacttcatggcccgccggggcgtcgagataagccattac
atccccgacagactggacttcggttacgggctgcatgtcgatggcatccgcgaactggcg
gctcagggtgtcgggctcctgttgaccgtcgattgcggcatcgccaacatcgatgagatt
cgagaagccaagacgctggggatgcacgtcattgtcaccgaccatcacctgcccggccaa
gacctgcccgaggccgaggtcatcatcaaccccaagcttgaggggtggcctactcccaac
cttgccggggtcggagtggcttttctgctcatgggcgcggtaaaccgcctcctccccggg
gctgcggtggacatccgcgacttcctggatctggtcgcactgggcactgtcgccgatgtt
gtccccctggatgagcagaacagaatcttggtcaaaaacgggcttctgctgatcaaggaa
ggccgccgtcccggcatccaggccctcaaggaaatcagtgggctgggaccagacgacaac
gtgggcacaggctccatcggctttgcccttgcacctcgcatcaatgccgccggccgcatc
ggagacccggacctcgccgtacgcatgctcttggcgacagacccggaggaagcacggcag
ctggccacgaaactcgacaaactcaacgccaaacgcaaactcgaagagcagcgcatcctg
gaagaagccatcacccaggccgagtcacagcttcacctgcccggcctcgtgctgcattcc
gaacactggcactcaggcatcatcggcatcgtggcctcgcgcatcgtggagcgctttcat
cgcccgtgtctgatcctgaccaaagaaaacggaatcttcaaaggctcgggccgctccacc
ccctccttcgacttgtatcaggccctcctgtcctgcaaacaatgcctctacaaatttggc
ggccaccggcaggcggcagggctgaaactcgaacccttccaactggccaatttgaaaaat
ctttttgcctgggccgtggaagagcaactgggcgcaaacccggccccaccagtcctggaa
ctggacgcggaactgccctttgccttgatcacggccacgttgctcaaagaacttgaactc
ctgcagccctatggccaaggaaacccgagacccattttcctttccccgccgctgagcatc
ctcaaacatcgttttttcagtcaaaagaaacacctggaactgcatttgtccgactccagc
gacggtacgaacatgcgcgccgtggcatggaggcagggagaacgctggcaggatgcatct
tttacgggcaaacagatcaaaatcgcctacacaccgcgactgtcgaaattcaatggactg
caacagatcgaactggccgtgcaggacatcctgtctctggaataa
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