Dehalococcoides mccartyi 195: DET0183
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Entry
DET0183 CDS
T00223
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
det
Dehalococcoides mccartyi 195
Pathway
det03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
det00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DET0183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
det03019
]
DET0183
Enzymes [BR:
det01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DET0183
Messenger RNA biogenesis [BR:
det03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DET0183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AAW40572
UniProt:
Q3ZA18
LinkDB
All DBs
Position
175537..177219
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AA seq
560 aa
AA seq
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MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI
QKMLSTPRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSG
VDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL
FSATMPPEVRKLTLETQTNPVTIQIGTQAPASSVSHSVYPVKNHQKTPLLIEILKTTETK
SVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLINS
PIQRLRVDGFDYATTRNDGQNHSQRRGFAPRRGYSAEGYNRSEMPAAETSPNSLTAEMPS
GNVRPFSQAVRSGRPADSAPRFRREGYSAPRFGGRPSFEDAPMAAKPVARFNARPAFRKE
DDAQAAAKAYPSFGRETGVTSAENTRSVSENPEQFSSRRPARFNGKASFANRPARPGNKV
GKPPFFRRSKPPVSENNPTY
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctttcaattttgctccggctgttatggccggggtcagggcttgcggt
tatcaagagcccacccccattcaggcccaggctattccccctattttagaggggcatgat
gttattggtctggcccaaacaggtactggcaaaaccgcggcttatgctttacccgttatc
cagaaaatgctttctacccccagggggcgggtacgtactttggtgctggcgcctaccaga
gagctggcctgccagattgctgagagcttccgctcgctgggtcagcgcgcccgcatccgg
gagtgctctatctacggcggggttaatatggaccagcaaatccgccgcttacggagcggg
gtagatgtggtagtggcttgccccggcaggcttttagaccatatctggcggggaactatt
gatatttgcggggtggagaccctgattatagacgaggctgaccgcatgtttgatatgggt
ttccagccggatatccagagtattttgaaatgtctggttcagccgcatcagaccctttta
ttttcagccaccatgccgccggaagtccgcaagctgaccttggaaacccagactaatccg
gtaactatccagattggtactcaggctccggcaagcagtgtcagccacagtgtttatccg
gtgaaaaaccatcagaaaacccctttgctgattgaaattctgaaaacaacggaaaccaag
tctgttttgatatttgcccgcaccaagtacggggcggaaaacctggctgatgaaatatcc
agagccggttttactactgcatctttgcagggcaatctttcccaaaaccgccgccatgcc
gtcatggaaggcttccgccgggggaattttaaaattctggtggctaccgatattgccgcc
aggggtctggatattgaccatatttcccacgtgataaattatgatatgccggatacccct
gaagattatactcaccgtatcggacggaccgggcgttttgaccgcaccgggcaggccctc
agcctggtgaccgggcgtgatggtgatatggtaagggatattcaaaaactgataaacagc
ccaatccagcgcctccgggttgatgggtttgattatgccaccacccgtaatgacgggcag
aaccattcgcagcgccggggctttgctccccgccggggttattcggctgagggttataac
cgctctgaaatgcctgcagctgaaacttcaccaaatagtcttacggctgaaatgccctca
ggcaatgtcaggccgtttagtcaggctgtccgttccggacgcccggctgattccgccccc
cgtttccgccgggaagggtactctgccccccgctttgggggacgcccttcgtttgaggat
gcccctatggcagctaagcctgtagccaggtttaatgcccgtcctgctttcaggaaagag
gatgatgctcaagctgcggctaaagcctacccttcatttggcagggaaaccggagtgact
tcggctgaaaatacccggtctgtttctgaaaacccggagcagttttcaagccgccgtccg
gcccgctttaacggcaaagcttcttttgcaaaccgcccggcccggccggggaataaagtg
ggaaaaccgcccttcttcaggcgttcaaaaccgcctgtttcagagaacaacccaacttat
tag
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