Dehalococcoides mccartyi 195: DET0604
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Entry
DET0604 CDS
T00223
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
det
Dehalococcoides mccartyi 195
Pathway
det03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
det00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DET0604 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
det03021
]
DET0604 (rpoC)
03400 DNA repair and recombination proteins [BR:
det03400
]
DET0604 (rpoC)
Enzymes [BR:
det01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DET0604 (rpoC)
Transcription machinery [BR:
det03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DET0604 (rpoC)
DNA repair and recombination proteins [BR:
det03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DET0604 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
MazG_C
YqfD
Motif
Other DBs
NCBI-ProteinID:
AAW40096
UniProt:
Q3Z8V3
LinkDB
All DBs
Position
558413..562300
Genome browser
AA seq
1295 aa
AA seq
DB search
MNEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPIKDFEC
ACGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNL
STRSLERIIYYSHFIITGVNDEAREKAIKDLEVISSQRVADKGSEVDTRVAQMEAEDATV
EAINQVRRDFSTEREQMEEDIQLLIDQLKDLQIGNLLTENQYYELKQRFSNVFEASMGAE
ALLKLLSYIDMDKERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVD
SLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLS
QCGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVYDILEEVVKERPVMLN
RAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARETM
LSIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFSDFEEAKHYYEMGIIDL
RAIIKVRDGKGNMLETTTGRIIFNDVLPKEVEFQNMDIPKSAIKKIIGRCYKILSSQDMA
VMLDKIKQLGFKYATSSGISIAMSDISVPREKAKLVAAADERTAISEGQFARGLITEDER
YNSIIETWMETTDRITDAIQAGFDKQGSVYMMANSGAKGNISQIRQMAGLRGLMTNPSGR
IIDFPIKSSLREGLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQED
CGTSNGTWIVEPKEKGMLPPLVDRVLGRWAAHNVVHPQTGEIIVGNNEEIDEAKAKAIGE
AGITEVFVRSPLTCEATHGMCRRCYGRDLGRVRLVDMNTAVGIIAAQSIGEPGTQLTLRT
FHTGGVVGVDITTGLPRVEELFEARPPKVQSIISEIDGEAEVIENENGRHIRIFSDEVYQ
DEYELPSGWKTQVQSGQWVDSGMVLASPEMEGKSKAVVQSDQNVVARVAGEVSVDGSLIT
IKYSESEEREYAIPAAMQIKVKTGDSVRAGQQLTDGSINPQDILSILGRDAVQKYLVEEV
QKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGG
EPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGKVDKLSGLKENVIIGKLI
PAQCKSCKEATVERAERIAAAAAAPAVSTLPENCL
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttaatgattttgatgcaatacggatttcactggcttcccctgaccagata
agaagctggtcttatggtgaggttaccaaacctgaaaccataaactatcgtacgttaaag
ccggagcgggacggtctgttctgtgagcgtatcttcggccctataaaggactttgagtgt
gcctgcggcaaatacaaacgtatccgctacaagggcattatatgtgacaagtgcggcgtg
gaaattgctcgtgccaaggtacggcgtgaacggatggggcatattgaactggcctgtccg
gtaggccatatctggtttacccgcggtattcccagccgggtaggcctgctgcttaatttg
tccacccgcagccttgaaaggataatttattattcccatttcattataaccggggtaaat
gacgaagcccgtgaaaaggccattaaagatttggaggttatttcctcccagcgggtagct
gataagggcagcgaggtagataccagggttgcccagatggaagccgaagatgccactgtt
gaagccataaatcaggttcgccgtgatttttcaactgaacgtgagcagatggaagaagat
atccagctgcttatagaccagctgaaagacctccaaataggcaatttgctgaccgaaaac
cagtattacgagctgaaacagcgtttcagcaatgtttttgaggcctccatgggtgccgaa
gctctgcttaagctgctttcttatatagatatggataaggagcggagcaaacttattcag
gaaacccgctccacttccggccagcgccgcaaaaaggctggcaaacagcttcagctggta
gaggctttccgccgctccagcaacaagcctgagtggatgattatgacggttctgccggta
ctgccgcctgacctgcgtcctatggttcagcttgacggcggccgttttgccaccagtgac
ttaaatgacctttaccgccgggttatcaaccggaacaaccgtctccagcacctgatggaa
atcggggcgccggagattattatccgcaacgaaaagcgtatgcttcaggaagcggtggat
tcacttattgataacggacgccgcggcaagagcgtggctgtaaatggtgaccacaaagcc
aagtccctttctgacctgcttcgcggcaaacagggacgcttccgccagaacctgctgggt
aaacgggttgactattcaggccgttcggttattgtggtaggcccttcactcaaactttca
cagtgcggtctgccccgccgtatggcacttgaactctttaagccctttgtcatgcaccgc
ttggtacgggacggcttagcccccaatatcaagagcgcccgccgtctggtagagcgcgcc
cgcccggaggtttacgatattctggaagaggtggtcaaggagaggccggttatgcttaac
cgcgctcccactctgcaccgccttagtatccaggcctttgagccggtgcttattgacggc
agtgccctcaggcttcacccgctggtctgttcagcctttaacgctgactttgacggtgac
cagatggctgtccacgtgcccctttccaaagcggccgtgaaggaagcccgtgaaaccatg
ctgtccattcataatatgatgcttccctccagcggtgagccggtggtatcccccagcctt
gatatggtcttcgggtgttattacctgactactacccggccgggtgctaagggtgaaggc
aagatattcagtgactttgaagaagccaagcactattacgaaatgggtattattgacctc
agggctattatcaaagtccgtgacggcaagggtaatatgctggaaaccactaccgggcgg
attatatttaatgatgtcctgcccaaggaagtagagttccagaatatggatatacccaaa
tccgccatcaaaaagataatcggccgctgttacaagattctttccagccaggatatggcc
gtcatgctggacaagataaaacagcttggcttcaaatacgccaccagctcaggcatttcc
attgccatgagtgatatttcggtgccgcgtgaaaaggccaagctggtagctgccgctgat
gagcggactgccatttccgaaggtcagtttgcccgcggtcttatcaccgaagacgaacgc
tacaacagcatcattgaaacctggatggaaactactgaccgcattacagatgctattcag
gccggttttgacaaacagggttccgtgtacatgatggctaactccggcgctaagggtaat
atttcccagatacgccagatggccggtttacgcggccttatgactaacccgtccggccgt
attattgacttccccatcaagtcttccctgcgtgaaggcctgactactctggaatacttt
atatctactcacggtgcccgcaagggtctggctgacaccgctttacgtacgtccggttca
ggttacctgacccgccgccttatagacgtaacccaggatgttattatccttcaggaagac
tgcggcacttcaaacggcacctggatagtagaacccaaagaaaagggtatgctgcccccg
ctggttgaccgtgtactcggccgctgggcagctcacaatgtggttcacccccagaccggc
gaaattatcgtgggtaacaatgaagagattgacgaagctaaggctaaggctatcggcgaa
gccggtatcaccgaagtctttgtccgctctccgcttacctgcgaagctactcacggcatg
tgccgccgctgttacgggcgtgaccttggccgtgtccgtctggtagacatgaataccgcc
gtaggtatcattgccgcccagagtatcggtgagcccggtacccagctgacactccgtacc
ttccataccggcggtgtggtaggcgtagatattacgaccggtcttcccagagttgaagaa
ctctttgaggcccgtccgcccaaggttcagtccattatttctgaaatagacggtgaggcc
gaggttattgaaaatgaaaacggccgccatatccgcatattctctgatgaagtatatcag
gacgaatatgagctgccttccggctggaagactcaggttcaaagcggacagtgggtggat
tccggcatggtgctggcttcgcctgaaatggaaggcaagtccaaggcggtagttcagagt
gaccagaatgtggttgccagagtggccggtgaagtttcagtggatggcagccttatcacc
atcaaatacagcgaaagcgaagaacgtgaatacgctatacctgccgccatgcagataaag
gttaaaaccggggatagtgtccgtgccggtcagcagctgactgacggctctataaacccg
caggatattctgtccattttgggcagggacgctgtccagaagtatctggttgaagaagtc
cagaaggtttactactctcagggcgtacatatcaacgataaacacatagaggttattgcc
cgccagatgcttatcaaggtacgcattgactcctcaggtgatactgacctggttccgggt
gaactggtagacaagttccgctacgaggatatcaacgctaaggttctggccgaaggcggc
gaaccggcaaccgcccataccgtgcttatgggtattacccgtgcttcactcagcaccgaa
agctggctggcggcggcctccttccaggagaccacccgtgtccttactgatgccgccatt
tacggcaaggtggataagctgtccggccttaaggaaaatgttatcataggcaagcttata
cctgcccagtgcaaatcctgcaaggaagctacggttgaaagagcggaacggatagccgct
gccgctgccgcacctgcggtcagcactctgccggaaaattgcctttag
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