Dehalococcoides mccartyi 195: DET0823
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Entry
DET0823 CDS
T00223
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
det
Dehalococcoides mccartyi 195
Brite
KEGG Orthology (KO) [BR:
det00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
det03016
]
DET0823
Enzymes [BR:
det01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DET0823
Transfer RNA biogenesis [BR:
det03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DET0823
Prokaryotic type
tRNA splicing ligases
DET0823
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAW39942
UniProt:
Q3Z899
LinkDB
All DBs
Position
750697..752157
Genome browser
AA seq
486 aa
AA seq
DB search
MTSPWQGILKKIDDYRWEIPQNYKTGMKVPGLVYASEPMLSQIWEEHAIEQIANVAFLPG
IVGKSMAMPDIHWGYGFPIGGVAATRISDGVISPGGVGFDINCGTRLLRTNLSVREVQPK
IDELLAELFAKIPSGVGGSGNIKLSQPDMDSVMTRGGNWALEKGMGESEDISLTEECGSL
SGANPDRVSPKAKTRGSSQLGTLGSGNHFLEVQVVAEIFDPEVASVFGVQETGQVLFLIH
TGSRGLGHQVCTDYVQLLNETVRKYGINLPDRQLACAPLKSEDGQNYLAAMACASNYAWA
NRQCITQWARDAFMKVFEKGRQDLGMNQIYDVAHNIAKIEEHMVDGKMQNVCVHRKGATR
SFPAGRPEIPAIYRKVGQPVIIPGDMGRYSYVAVGTETAMKETFGSTCHGAGRMLSRSLA
KKAASVPQLMENLRAQGISVMAGDIDSLAEEAPEAYKDVADVVEVTHKAGIARNIFKTRP
LGVIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcccgtggcagggaatactaaaaaaaatagatgattaccgctgggaaattccc
cagaactataaaaccggtatgaaagtgcccggtctggtgtatgccagtgagcctatgctt
agccaaatatgggaggagcatgctatagagcagattgccaatgtggcatttctgcctggt
attgtcggcaagtctatggctatgcctgatattcactggggttacgggtttcctataggc
ggggtggcggccacccggataagtgacggggtaatttcacccggcggcgttggttttgat
ataaattgcggcacccgccttttgcggacaaaccttagtgtccgggaggtacagcctaag
atagatgaacttttggctgagctttttgccaaaataccttccggtgttggcggcagcggt
aatataaagctgagccagccggatatggatagcgtcatgacccgcggcggaaactgggca
ctggaaaagggcatgggcgagtctgaagatatcagcctgactgaggaatgcggcagtctg
tccggtgctaatccggacagggtttcccccaaggctaaaaccaggggttcctcccagctg
ggtacactaggttcgggaaatcattttctggaagtacaggtggtggctgagatatttgac
ccggaagtggcctcagtatttggggtgcaggaaaccggtcaggtactttttcttatccac
accggttcgcggggtttggggcatcaggtctgcactgactatgtccagctgctcaatgag
accgtcaggaaatatgggataaatttgcctgaccgccagctggcctgtgccccgttaaaa
tcagaagacgggcagaattatctggctgctatggcttgcgcttccaattatgcctgggct
aaccgccagtgcattacccagtgggcgcgggatgcctttatgaaggtatttgaaaaaggg
cggcaggatttgggtatgaaccagatatacgatgtggctcataatattgccaaaatagaa
gaacacatggttgacgggaaaatgcagaacgtatgtgtccaccgcaagggcgcaacccgc
tcttttccggccgggcggcctgaaatacccgcgatttaccgaaaagtggggcaacctgtt
ataatacccggggatatgggcaggtactcatatgtggctgtgggcaccgaaactgccatg
aaagaaacttttgggtctacctgccatggtgcaggccggatgctaagccggagcttggct
aaaaaagctgcttccgttccgcagcttatggaaaaccttagagcccagggtataagtgta
atggcaggtgatatagacagcttggctgaagaagccccggaagcctacaaggatgtggca
gatgtggtagaagtaacccacaaagccggtattgcccgaaatatatttaaaaccagacca
ttaggagtaatcaagggttaa
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