Dehalococcoides mccartyi 195: DET1281
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Entry
DET1281 CDS
T00223
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
det
Dehalococcoides mccartyi 195
Pathway
det03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
det00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DET1281 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
det03400
]
DET1281 (mfd)
Enzymes [BR:
det01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DET1281 (mfd)
DNA repair and recombination proteins [BR:
det03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DET1281 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAW39434
UniProt:
Q3Z706
LinkDB
All DBs
Position
complement(1166595..1170041)
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AA seq
1148 aa
AA seq
DB search
MNLSGLLPLIDQSPSFNSLFEALDKGEADISVLDAGRGFSLAAVYRKLKCPMLIITSQPE
RARELLVQIAAYTGEEPGFLPDPSLLPYQRAVSDRNTSLEKMRLAGILGGFIRSQDAQII
VSAVPALLQRYVSPEIFKQSFLQVWTGLETEPQDLIRRFQQLGYRQENIVEIPGTYSRRG
GILDIFPYTEDNPVRLEFFGNTLESLRVFDPQSQRSGKSLNELTISPASELFHLGQLPVK
ELNARLEALLTDNLNPEFSRTLSADIARLKEGLKPEYPDFFAPLFNTSSIFDYLPADALV
VLDEPASIEQAASHLDKEAEELRSDRLSQGELPSVYPRPYFSWEEISAKLKTKKRLIMAS
FGRESEALKLDFASQDNYVGRLSALYEKLGELKGHTGRVVIISHQAARLAELLKEHGISA
SVQTDILNPPPPSSLSLVQGILGGGWNLSGNVHILTDAELFGFVKERRLPSKRPSARKGV
VLDIKPGEFVVHIDHGVALFSGVSHLNRDGMDKEYLILNYAGGDKLYVPTDQMDRVNRFI
GSGDEPPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKRKMASGYPFSTDTVWQQEM
EASFPYLETPDQLKALYDIKADMENPRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVA
VLVPTTVLAQQHYTTFRERLATFPVKIEVLSRFCSPSEQKTTVENLERGEVDICIGTHRL
IQADITFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSLVGVRDM
SIIETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVNNRVMGINLLAERIQQLV
PEARIGIAHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL
TQLYQLRGRVGRSSQLAYAYFLYEKDKRLTSDAEKRLKTIYEAAELGAGYGIAMKDLEIR
GAGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKAKGSGLSKEEIRIQNMPAPKLDLPLD
AFIPEYYIQDLDLRLSIYQQLSAITNLAGVLEKEKELADRFGQIPPELENLLYSLRLRLL
AKKAHVDTIVTEGSQIVVRMLGGLIINKTLLEPLRAGVLVGRNQVSVQYKKLGDSWKEVL
EEVVWRLG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcttagcggtttgctgccccttatagaccaaagcccgtcatttaacagcttgttt
gaagctctggacaaaggtgaggctgatatttctgttttggatgcggggcggggtttcagt
ctggcagctgtataccgtaaactcaaatgccccatgcttattattacctcacagccggag
cgggccagggaattgctggtgcagatagctgcttataccggggaagagccggggtttttg
cctgacccaagtttgctgccgtaccagcgggctgtttctgaccgcaatacctcactggaa
aagatgcgtctggcaggtattttgggcgggtttatccgcagccaagacgcccagataata
gtcagtgccgtgccggctcttcttcagcgttatgtatcaccggaaatattcaagcagtca
tttttgcaggtctggactggtttggaaaccgaaccccaggatctgatacgccgttttcag
cagctgggctaccgccaggaaaatattgtggaaataccgggtacatattcccgccggggc
ggcatactggatattttcccctataccgaagataacccggtacggctggagtttttcggc
aatacgctggaaagcctgcgtgtttttgacccccaaagccagcgttcgggcaaaagcctg
aatgaacttaccataagcccggcaagtgagctgtttcatctggggcagctgcccgttaag
gaacttaacgccaggctggaggctttgcttactgataaccttaatcccgaattcagccgc
actttgtccgcagatatagcccgccttaaggaagggcttaagcccgaataccctgatttt
tttgcccccctgtttaacacctcaagtatatttgattacctgccggcagatgcgctggtg
gtgctggatgaaccagcctccatagagcaggcggcctcccatctggataaagaagccgaa
gagctgcgctctgaccgtttgtcacagggtgagctgccttcggtttatccccgcccctat
ttcagctgggaagagatatccgccaagctgaaaaccaaaaaacgtcttattatggcctct
ttcgggcgggaaagtgaggccttaaagctggattttgcctctcaggataactacgtgggg
cgtttatccgctttgtatgaaaaactgggggagttgaaagggcatacaggccgggtagtt
atcatcagccatcaggctgcccgtctggcagagcttctaaaagagcatggtatttcagca
tctgtccaaacagatattttgaacccccctcccccctccagccttagcctggttcaggga
atactgggcggcggctggaatctcagcggcaatgttcacatactcactgatgccgaactg
ttcggctttgtaaaagagcggcgtctgccttccaaacgcccgtctgcccgcaagggagtg
gtgctggatataaaaccgggtgaatttgtggttcatatagaccacggggtggccttgttc
agcggggtcagccacttgaaccgtgacggcatggataaagagtacctgatactcaattat
gccggcggtgacaaactctacgtccccacagaccagatggacagggtaaaccgttttata
ggcagcggggatgagccgccgtctttgcaccgtttgggtactcaggaatggcaaagggct
aaagaaaaggccagcgaatctgcggaggaaaccgcccgtgaactccttgatatttatgcc
aaacgtaaaatggccagcggatacccgttttccacggataccgtctggcagcaggaaatg
gaggcatctttcccgtatctggaaacgcctgaccagctgaaagccctgtatgatatcaag
gcagatatggaaaacccccgccctatggacaggcttatactgggggacgtgggttatggt
aaaaccgaagtagccatacgggcagccttcaaggcggttatggacggcaagcaggtggca
gtattagtacctactaccgtgcttgcccagcagcattacaccactttccgtgagcgtctg
gctactttccctgtcaaaatagaggtgcttagccgtttttgcagcccgtctgaacagaaa
accacggttgaaaatctggaaaggggtgaggtggatatctgcataggtactcaccgcctg
attcaggctgatataacgtttaaagatttggggctggtcataatagacgaagaacagcgt
ttcggggtagcccacaaggagttttttaagaagctgcgggctcaggtagatgtgcttacc
ctcagcgctactcctatcccccgcactttgcacatgtctttggtgggggtgcgggatatg
agtattatagaaaccccgcccggtgaacgcctgcccatcaaaaccgtggtagccgctttt
gatgagaggctgatacgtgaggccatactgcgggagatggaaaggaacgggcaggtattt
tttgtaaataaccgggtgatgggtataaatctgctggcagagcgtattcagcagcttgtc
cccgaagcccgtatcggcattgcccacgggcagatggccgaagaaaaactggccgctgtc
atggctgattttgtgcggcacgagctggatgtgctggtatgcaccaccattatagagtcc
ggggtggatgtacctaatgccaatacccttatcataaaccgggcagaccgcttcgggctt
acccagctttaccagctgcgggggcgggtgggacgcagttcccagctggcttatgcctat
ttcctgtatgaaaaagataaacgcctgacatctgatgccgaaaaacgcctgaaaactatt
tatgaggcagccgagcttggggcaggctacggtattgccatgaaagatttggaaatacgg
ggtgcgggcactttgctgggggtaaaacagtccggatatataaattcggtcggtttcaat
ctgtatacccagatgctgtcagaggctgtggccgggctgaaggccaagggcagcgggctt
tccaaagaggaaatacgtatccagaatatgcccgcccccaagctggatttacctttagat
gcctttatacccgaatattatattcaggatttggatttgcgtttatctatttaccagcag
ttatccgccattaccaatctggcgggagtgttggaaaaggaaaaagagctggcagaccgg
tttggacaaataccgccggagcttgaaaacctgctttactccctccgcctgcgtttgctg
gccaaaaaagcccacgtggataccatagtgaccgaaggcagccagatagtggtgcggatg
ctgggcgggctgataataaacaaaaccttgcttgagccgctgagggcaggggtgctggta
gggcgtaatcaggtgtctgtccagtataaaaagctgggtgatagctggaaagaagtgctg
gaagaggttgtttggcggctgggctag
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