Dehalogenimonas etheniformans: HX448_06390
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Entry
HX448_06390 CDS
T08265
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
deth
Dehalogenimonas etheniformans
Pathway
deth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HX448_06390 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deth03021
]
HX448_06390 (rpoC)
03400 DNA repair and recombination proteins [BR:
deth03400
]
HX448_06390 (rpoC)
Enzymes [BR:
deth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HX448_06390 (rpoC)
Transcription machinery [BR:
deth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HX448_06390 (rpoC)
DNA repair and recombination proteins [BR:
deth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HX448_06390 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
YlqD
Motif
Other DBs
NCBI-ProteinID:
QNT76340
LinkDB
All DBs
Position
complement(940606..944484)
Genome browser
AA seq
1292 aa
AA seq
DB search
MNEVIDFDAIRISLASPEQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPTKDFEC
SCGKYKRIRYKGIICDKCGVEVARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLDL
STRSLERIVYFSHYVITSVNEAARQTAIGDLEKGRRLEMDERQSEIEAKASEMESAGADV
QEINNLRRDFEAERDESEEETVSIVEQLAGLRTGNLLTESQYYDLKTRYPDIFDAKMGAE
AILDLLRAIDLGEMRNHLIQETRSSSGQRRKKASKQLQLVEAFRRSGNKPEWMVLTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLLEIGAPEIIIRNEKRMLQEAVD
SLIDNGRRGRSVAVSGDHKAKSISDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLQLH
QCGLPRRMALELFKPFVMHRLVTDGLAPNIKSARRLVERARPEVYDILEDVVKDRPVMLN
RAPTLHRLSIQAFEPVLIDGSALQIHPLVCSAFNADFDGDQMAVHLPLSKAAVKEAREAM
LSIHNMLLPSSGDPVVTPSLDMVFGCFYLTTIRPGLKGEGKHFGSFEEVKRYFDLGIIEL
RAEIEVRTPEGEKLKTSAGRIIFNEALPPGLPFFNKPVDKSTIRRLIGEYKRITSDEIMA
KSLDQVKQLGFRFATRSGITIAMGDIAVPAAKSNIVATAESETAVIEQQYSQGLITDDER
YAGVIEIWMRATEQITDAISKGLDTYGNVYMMATSGAKGNISQIRQMAGMRGLMTNPSGR
IIDFPIKASLREGLSAIEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDLIVFEDD
CGTTDGLWIEEPKEKGILPPLAERISGRLAAQPVANPQTGEILVERNGEIDDKKAKEIAA
AGVTAVYVRSPLSCGSRRGVCTKCYWRDLGRGHTVEPYTAVGIVAAQSIGEPGTQLTLRT
FHTGGVVGTDITTGLPRVEELFEARPPKAQAIISEIDGTVQVMESDAGRSVQVISRETYQ
DEYDLPEGWKLEVTEGQPVDMGAVLATAPEAAKKSAHLTTGESVLAARVGGRVSVEGTRL
VIKYEDIDQREYLVPAASHIAVKDGEAVKAGQRLTDGSVNPQDILAVLGREAVQRYLVEE
VQKVYFSQGVHINDKHIEVIVRQMMNRVRIDSSGDTDLVPGELVDKFRYEDINANILAEG
GEPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIHGKKDVLSGLKENVIIGKL
IPAQCQSCRDATADKNAELEAAKMVQLEQPAI
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagtcattgattttgacgccattcggatctcgctagcctctccggagcagatc
cggagttggtcgtatggtgaggtcaccaaaccagagacgatcaactatcggactcttaag
ccggaacgcgacggcctattctgcgagcgcattttcggacctactaaagacttcgaatgc
tcttgcggtaaatacaagcgcatccgctacaagggtatcatctgcgataaatgcggtgtc
gaagttgcccgggccaaagtacgtcgcgagcgcatgggccacattgagcttgcctgcccg
gtcggccatatctggtttacccgaggcataccctctcgggttggactgctgcttgatctg
tctacccgcagcctcgagcgcattgtctacttttcccactacgttatcacctcggtcaac
gaagctgcccgccaaaccgctataggcgatcttgaaaaaggacggcgccttgagatggat
gagcgccagagcgagatcgaagccaaggcttccgagatggaatccgccggcgccgacgtc
caggagatcaacaacctgcgccgcgacttcgaagccgaacgcgacgaaagcgaagaagag
acggtcagcatcgtcgaacaactggctggtttgcgcaccggcaacctgttgactgaaagc
cagtattatgatttgaagactcggtacccggatatcttcgatgcgaagatgggcgctgag
gcgattctcgaccttttacgcgccatcgacctgggcgaaatgcgaaatcacctcatccag
gaaacccgctcttcttccggtcagaggcgcaagaaggcatccaagcagcttcaactggtc
gaggctttccgccgtagcggcaacaaacctgaatggatggttctgaccgttctgccggtg
ttgcctccggatctgcgcccgatggtgcagctcgacggcggacgttttgccacttcggat
cttaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctgcagcaccttctcgag
atcggcgctccggagatcatcattcgcaatgaaaagcgtatgctccaagaggctgtcgac
tccctgattgataacgggcgccgcggccgctccgtcgccgtgtccggcgaccacaaggcc
aagtctatttccgatctgcttcgcggcaagcagggccgcttccgccagaacctgctgggt
aagcgcgtcgactattccggccgttcggtcatcgtggtcggccccagcctccaactccat
cagtgcggtttacctcgccgtatggccctcgaactttttaaaccattcgtcatgcatcgc
ctggtgactgacggtttggcgcctaatattaagagcgcccgccgattggtggagcgtgcc
cgacctgaggtctacgacatccttgaggacgtagtcaaagacaggccggtgatgctcaac
cgcgccccgacactgcaccgtttatcgatccaggcttttgagccggttttgattgatggc
tcggcgctgcagatccaccctctcgtctgttccgctttcaacgcggacttcgatggcgac
cagatggctgtccatctgcctctgtccaaggctgcggtcaaggaagcccgggaggcgatg
ctctccattcataacatgcttctgccgtcctccggtgatccggtggttacgcccagcctt
gatatggtatttggttgtttctacttgaccactatccgccccggcctcaagggcgagggc
aagcacttcggcagcttcgaagaagtcaagagatatttcgatctcggtattatcgagctt
cgggctgaaatagaagtcaggactcctgaaggcgagaaactaaagaccagtgccggccgg
atcattttcaacgaggcgttaccacccggtctgcccttcttcaacaaaccggttgacaag
tcaactatccgccggcttatcggcgaatataagcggattaccagtgatgaaataatggct
aagtcgcttgatcaggtcaaacaacttggtttccgctttgcgacccggtccggtattact
atcgctatgggcgacattgccgtaccagccgcaaagtcgaacatcgttgccactgcggaa
tctgaaactgcggtcatcgaacagcaatactctcagggtcttatcaccgacgatgaacgg
tacgctggcgttatcgagatctggatgcgcgccactgaacagattaccgacgccatctcc
aagggccttgatacctacggcaacgtctacatgatggctacttcgggcgcaaagggtaac
atttcccagatccggcagatggcaggtatgcgcggccttatgactaacccctccggccgt
atcatcgacttcccgatcaaggcatccttgcgcgaaggcttatccgccatcgaatacttc
atttccacccatggcgcgcgcaagggtctcgccgacacagctcttcggacctccggttcc
ggctacctgacccgccgcctcatcgacgttacccaggaccttatcgtcttcgaggatgat
tgcggcaccaccgatggtctatggattgaggaaccaaaagagaaaggaattcttcctcct
ctggccgagcggatttcgggcaggttggccgctcagccggttgccaatccccagaccggt
gagatcctggttgaacgaaacggtgagatcgatgataaaaaggctaaagagatcgccgcc
gccggcgtcactgcggtctatgtccgctcgcctttatcctgcggctcacgccgcggtgtc
tgcaccaagtgctattggcgcgacctcggccgcggtcacaccgtcgaaccctataccgct
gtaggtatcgtcgctgcccagagtatcggcgaacccggcacgcagttgaccctgcggacc
ttccacacaggtggcgtcgtcggtacggatatcaccaccggtctgcctcgcgtcgaggaa
cttttcgaagcccggcctcccaaagctcaggctatcatttccgagatcgatggcacggtc
caggtaatggagtcggatgccggccgaagtgtacaggttatctcgcgtgagacttaccag
gatgaatatgatttgcccgaaggttggaaactcgaagtaaccgaaggccagccggttgat
atgggtgcagttcttgccaccgcaccggaagccgccaagaagtctgcccacctgaccacc
ggcgaatccgtcttggctgcccgcgttggcggccgggtcagcgtcgaaggtacacgcctt
gtgatcaaatatgaagacatcgaccaacgcgagtatctcgtaccggcggcctcccatatc
gcggttaaagatggggaagctgtcaaagccggccagcgccttaccgacggctcggtcaat
ccgcaggatatcctggcggtgcttggccgtgaggccgttcagcggtatctcgttgaagaa
gttcagaaggtttacttctcccaaggcgttcatatcaatgacaagcacatcgaggttatc
gttcgccagatgatgaaccgggttaggatcgattcctccggtgataccgatctggtcccg
ggtgaactggttgacaagttccgttacgaggacatcaacgccaacattttggctgaaggc
ggcgaacctgccacagcccacaccgtcctcatgggtatcaccagggcttcgttgtcgacc
gaatcatggctggctgcagcctccttccaggagacgacccgcgttcttaccgacgccgcc
atccacggcaagaaagacgtcctctccggactcaaggagaatgtcattatcggtaagctt
atcccggctcaatgtcagtcctgccgggacgccactgccgataaaaacgccgaactggag
gccgccaagatggtacaattggaacagccggcgatctaa
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