Dehalogenimonas etheniformans: HX448_09150
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Entry
HX448_09150 CDS
T08265
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
deth
Dehalogenimonas etheniformans
Pathway
deth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HX448_09150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deth03019
]
HX448_09150
Messenger RNA biogenesis [BR:
deth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HX448_09150
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
QNT76829
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Position
complement(1520107..1521867)
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AA seq
586 aa
AA seq
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MNNQPQSQSQQSRRHRRPASSTSSASKPQPQPPRRGPGSKIRIVPLGGLGEIGKNMMVVE
YDDDIIIIDCGLMFPEEDMPGIDLVIPDISYLQERKDRILGIVITHGHEDHIGALPYILP
QLNVPIYCAPLPQGLIQVKLKESHVHNAKIHAVKPGERIDLGPFNIEFISMCHSIPDSAG
LVIRTPVGTIVHSGDFKLDYTPVDCRPTDLGRLGQIGAEGVLLLMADSTHVELPGYTPSE
KVVGETISTIMGAAKGRVLVTTFASLVSRIQQVMDAAVLYNRKVFIAGRGMNDIVKMALK
MGYLRAPDGLIGELSEMHRLPPNRIAMVTTGSQGEPTSALVRIANREHREVQIKHGDTVI
ISASPIPGNESVVSKTIDSLFKQGAMVYYDRIAKVHVHGHASQEELKLLQSLIRPQYFVP
VHGEYRHLKLHAQLAEGMGVDPENIFILEDGDILELSSNGGRVTGRVPSSNVYVDGVSVG
DINGVVLRNRKMLSQDGIVVAIITLDAATGQMAVRPDIVSRGFVDPEAGRALLDESKDIV
SRMFAEEKQRISDSAVINTRVRDVLSKFYYDRTRRRPMVLPVLVTV
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaaccaaccccagtcccaatcccagcaaagccgccgccacaggaggcccgccagc
tcaacctcttcggcttctaaaccccagcctcagcctccgcgccgaggcccgggttcaaag
atccgcatcgtgccgcttggaggactcggcgagatcggcaagaacatgatggtcgtcgaa
tacgacgacgacattatcatcatcgactgcggcctgatgttcccggaagaagacatgccg
ggaatcgaccttgttatcccggacatcagctatctgcaggaacgcaaagatagaatcctc
ggcatcgtcataactcacggccacgaagaccatatcggggctctaccttacatcctgccc
cagctcaacgtcccaatctactgcgctccactgccccaaggcctgatccaggtcaaactc
aaggaatcacacgtccacaacgccaagatccacgccgtcaaaccgggtgagagaatcgac
ctggggccgttcaatatcgaattcatctccatgtgccactccataccggattcggccggg
ctggttatcaggactccggtagggacgatcgtccactccggcgatttcaagctggactac
accccggtggattgccggccgaccgacctggggcggctaggccagatcggtgccgagggc
gttttgctgctcatggccgactccacccatgtcgaactgccgggatatacgccttcagag
aaggtggtcggcgagacgatctcgacgatcatgggcgccgccaagggcagggtgctggtg
acgaccttcgcctccctggtgtcccgcatccaacaggtgatggacgcggcggttttgtac
aaccgaaaggtgttcatcgccgggcgcggcatgaatgatatcgtcaagatggcgctcaag
atgggctacctcagggccccagacgggctcatcggcgagctatccgagatgcacaggctg
ccgccgaaccgcatcgccatggtcaccaccggctcccagggcgaaccgacatcagccctt
gtccgcatcgccaaccgcgagcaccgcgaggtgcagatcaaacacggagatactgtcatc
atttccgcctcgccgattccgggaaacgaatcagtcgtttcgaagaccatcgatagtctg
ttcaagcagggcgccatggtctattacgaccgcatcgccaaggtccacgtccacggccac
gcttcccaggaggagttgaagctgctccaaagcctcatccgtccgcagtattttgtgccg
gtgcacggcgaatacagacatctaaagctccatgcccaactggcggaggggatgggggtg
gatccggagaacatcttcattctggaggacggtgatatcctcgaactctcatccaacggc
ggcagggttaccggccgcgtcccgtcgtcgaacgtctatgtcgacggggtgtcggtgggg
gacatcaatggtgttgtcctgcgcaaccgtaagatgttgtctcaggacggcatcgtcgtt
gccatcatcacgctcgatgccgctacaggacagatggcggtgaggccggatatcgtctcg
aggggcttcgtggacccggaggcggggagggcactcctcgacgagagcaaggatatcgtc
agccgcatgttcgcggaagaaaagcaacggatttcggactcggcggtaattaacacaagg
gtacgcgatgtattgtccaagttctactacgatcggactcgccggaggccgatggtgctg
ccggtgctagtgaccgtgtaa
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