Desulfuromonas sp. DDH964: DBW_1111
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Entry
DBW_1111 CDS
T04368
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
deu
Desulfuromonas sp. DDH964
Pathway
deu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DBW_1111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deu03021
]
DBW_1111
03400 DNA repair and recombination proteins [BR:
deu03400
]
DBW_1111
Enzymes [BR:
deu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DBW_1111
Transcription machinery [BR:
deu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DBW_1111
DNA repair and recombination proteins [BR:
deu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DBW_1111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
TyeA
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AMV71485
UniProt:
A0A143B561
LinkDB
All DBs
Position
1211894..1216075
Genome browser
AA seq
1393 aa
AA seq
DB search
MEDIFTLLERPKDPLNFNAIRLSLASPEKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLACPVAHIWFLKSL
PSRISTLLDMTLKEVEKILYFEAYVVLDPGESNLVVGNILTEEKYHELMEEFSGQFTASM
GAEAIRELLSAIELDELGSSLRVEMKEAASEAKRKKVAKRLKVVEAFRESGNRPEWMILE
TIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAITGPNKRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYNKLEERGYCTTIKSAKKMVEKEKPEVWDVLEEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSVESQIEA
RVLMMSTNNILSPANGKPIIVPSQDMVLGIYYMTRERAFVKGSGKIFASPEEVRIAFDAG
EADLQAKVKVRMVNAVGEAPQLIETTIGRVLLRDVVPESIPFEYINKGMTKKQVAELIDA
SFRLAGNKETVILADKLKETGYKYSTLAGISICLDDMVIPAGKENFINKAVEEVKEIQQQ
YTEGLITDGERYNKVIDIWAKCTEDIAQTMLGNLSVDVLVDPASGEKVKVPSFNAIHMMA
DSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDAIITETDCGTLDGIQVSSLTEGGEVIEPLGDRILGRSALE
DVLDPVTGEVLVEANAEIDEALVKKVEDAGIEKLKIRSVLTCQSRRGICATCYGRDLARG
HLVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRRAEQTSLEARFDGELKYINLNTV
VDTAGNHVVMNRNGEIAVIDETGRERERYGVVYGAKLRIGPGGAVKSGVLIAEWDPYTMP
ILTEIAGVVRFGDIIEGITMEEQVDEVTGLSRKVIIESKDPAKRPRITLKDAEGKTAKLP
NGAPARYMLPVGANIVVTEDMLASAGEILSKIPRETTKTKDITGGLPRVAELFEARKPKE
FAVISEIDGMVSFGKDSKGKRKVVVTPELGEAKEYLIPKGKHISVHEGDHVKAGEALMDG
SSNPHDILRVLGEKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRIKEVGDTR
FLLDDQVERWEFEQENQRVMAEDGQPAVGEPLMLGITKASLSTESFISAASFQETTKVLT
QAAIEGKVDFLRGLKENVIMGRLIPAGTGVSKYRGAKLLIEEPEELPEPMPEEEEIDDSD
VSELEEGIEPALD
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
ttggaagatatctttactctgcttgagcggccgaaagatcccctcaacttcaacgccatc
cggctctccctggccagcccggagaagatccgcgaacgttccttcggcgaagtcaagaag
cccgagacgatcaactaccggaccttcaagcccgagcgggacggcctcttctgcgccaag
atcttcggtccgaccaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcatcgtctgcgaaaagtgcggcgtcgaggtcattccgagcaaggtgcgccgcgag
cgactcgggcatatcgacctcgcctgcccggtggcgcatatctggttcctgaaatcgctg
ccgtcgcggatttcgacccttctcgacatgaccctcaaggaggtcgagaagatcctctat
ttcgaggcttatgtcgtcctcgatccgggggagagcaaccttgtggtcggcaatatcctc
accgaggagaagtaccacgagctgatggaggagttctccggccagttcaccgccagcatg
ggggccgaggcgattcgtgagctcctctccgccatcgagctcgacgagctcggcagcagc
ctgcgggtggagatgaaggaggcggcgagcgaggcgaagcgcaagaaggtcgccaagcgt
ctcaaggtcgtcgaggccttccgcgaaagcggcaaccgccccgagtggatgatcctcgaa
accatcccggtcctcccccccgagctgcgcccgctcgtccccctcgacggcggccgtttc
gccacctccgacctcaacgacctctaccgccgggtgatcaaccgcaacaaccgcctgaaa
cggctgatggaactgcgcgccccggaggtcattatccgcaacgagaagcggatgctgcag
gaggcggtcgacgccctctttgacaacggccgccgcggccgggcgatcaccggtcccaac
aagcgtcccctcaagtccctctccgacatgctgaaagggaaggggggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcggggcgcagcgttatcgtcgtcggcccggag
ctgaagctgcaccagtgcggcctgccgaagaagatggctctcgaactcttcaaacccttc
atctacaacaagctcgaagagcgcggctactgcaccaccatcaagagcgccaagaagatg
gtggagaaggagaagccggaagtctgggacgtgctcgaggaggtcatcaaggaacacccg
gtgatgctcaaccgcgcaccgaccctgcaccgtctcggcatccaggccttcgaaccggtc
ctcatcgaagggaaagcgatccagctccacccgctggtctgcaccgccttcaacgccgac
ttcgacggtgaccagatggcggtccacctgccgctgtcggtcgagagccagatcgaagcc
cgggtgctgatgatgtcgaccaacaacatcctctcgccggccaacggcaagccgatcatc
gtcccctcccaggacatggtcctcggcatctactacatgacccgcgagcgtgccttcgtc
aaggggagcggcaagatcttcgcttccccggaagaggtgcgcatcgccttcgatgcgggg
gaggccgacctccaggccaaggtcaaggtgcgcatggtcaatgccgtcggcgaagcgccg
cagctgatcgaaaccaccatcggccgcgtcctgctgcgcgacgtcgttcccgagtcgatc
ccttttgaatacatcaacaaggggatgaccaagaagcaggtggcggagctgatcgacgcc
tccttccgtctcgccggcaacaaggagacggtcatcctcgccgacaagctgaaagagacc
ggctataagtattcgaccctggccggcatctcgatctgcctcgatgacatggtcatcccc
gccggcaaggagaatttcatcaacaaggcggtcgaagaggtcaaggagatccagcagcag
tacaccgagggtctcatcaccgacggcgagcgctacaacaaggtcatcgacatctgggcc
aagtgtaccgaggatatcgcccagaccatgctgggcaacctctccgtcgacgtcctcgtc
gaccccgcttccggggagaaggtgaaggttccctccttcaacgccatccacatgatggcc
gactctggggcccgcggctccgcccagcagatccggcagctggccggtatgcgcggtctg
atggccaagccgtcgggcgagatcatcgagaccccgatcaccgccaacttccgcgagggt
ctgaccgttctgcagtacttcatctcgacccacggcgcccgcaagggtctcgccgatacc
gcgctgaagaccgccaactccggttacctgacccggcgcctggtcgatgtcgcccaggac
gccatcatcaccgagaccgattgcggcactctcgatggcatccaggtctcctcgctcacc
gagggaggcgaggtgatcgaacctctgggcgatcgcatcctcggccgctcggccctggag
gatgtcctcgatccggtcaccggtgaggtgctggtcgaagccaacgccgagatcgacgaa
gcgctggtcaagaaggtggaggacgccgggatcgaaaagctcaagattcgctcggtcctc
acctgccagagccggcgcggcatctgcgccacctgctacgggcgcgatctcgcccgcggc
cacctggtcaacctcggcgaggcggtcggcgtcatcgccgcccagtcgatcggcgagccg
ggcacccagcttaccatgcggaccttccatatcggtggtaccgcgtcgcggcgggccgaa
cagacctccctcgaagcccgcttcgacggcgagctcaaatacatcaacctcaacaccgtc
gtcgataccgccggcaaccatgtcgtcatgaaccgcaacggtgaaatcgcggtgatcgac
gagaccggtcgcgagcgcgagcgctacggcgtggtctacggcgccaagctccggatcggc
cccggcggagcggtgaagagcggcgtcctgatcgccgagtgggacccctacaccatgccg
atcctcaccgagatcgccggtgtcgtgcgcttcggcgacattatcgaggggatcaccatg
gaggagcaggttgacgaagtcaccggcctctcccgcaaggtcatcatcgagtcgaaagac
ccggcgaagcggccgcgcattaccctcaaggacgccgaggggaagaccgccaagcttccc
aacggagctccggcgcgctacatgctgccggtcggcgccaacatcgtcgtcaccgaggac
atgctcgccagcgccggtgagatcctctccaagatcccccgcgaaacgaccaagaccaag
gacatcaccgggggtctgccgcgcgtcgccgagctcttcgaggcgcgcaagccgaaagag
ttcgccgtcatctccgagatcgacggcatggtctccttcggcaaggacagcaaggggaaa
cgcaaggtcgtcgtcactcccgagcttggcgaggcaaaggaatatctgatccccaaaggg
aagcacatcagcgtccacgagggggatcatgtcaaggccggcgaggcgctgatggatggc
tcctccaacccccacgacatcctgcgcgtccttggcgagaaggagctggccaagtacctg
gtcgacgaggtgcaggaggtctaccgcctgcagggggtcaagatcaacgacaagcacatc
gagacgatcgtgcgccagatgctgcgccgggtccgcatcaaggaggtcggcgatacccgc
ttcctcctcgacgaccaggtcgagcgctgggagttcgaacaggagaaccagcgggtcatg
gccgaggatggccagcccgccgtcggcgagccgctgatgctcggcatcaccaaggcgtcc
ctctccaccgagtccttcatctccgccgcatccttccaggagaccaccaaggttctcacc
caggcggcgatcgaagggaaggtcgatttcctgcgcggactcaaggagaacgtcatcatg
ggccgcctgatcccggccgggaccggtgtctccaagtaccggggcgcgaagctcctcatc
gaggagccggaagagctccccgagccgatgccggaagaggaagagatcgacgacagcgac
gtaagtgagctcgaagaagggatcgaaccggccctcgattga
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integrated database retrieval system
