Desulfuromonas sp. DDH964: DBW_1204
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Entry
DBW_1204 CDS
T04368
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
deu
Desulfuromonas sp. DDH964
Pathway
deu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBW_1204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deu03019
]
DBW_1204
Enzymes [BR:
deu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DBW_1204
Messenger RNA biogenesis [BR:
deu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBW_1204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMV71578
UniProt:
A0A143B5G6
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Position
1296420..1297691
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AA seq
423 aa
AA seq
DB search
MKFTELNLPAEVLKGVAAVGFTELTPVQEESIPLALAGKDVAAQAQTGTGKTAAFLISLF
TRLLRSDRGSGRDPRALVLAPTRELVMQICEDAKGLGVGCPFRVEAIFGGVDYDKQRQAL
KDGVDIIVATPGRLIDYAKQRVFSFNSIEAVVIDEADRMFDMGFIKDLRYILRKLPPFEE
RQTMLFSATLSPRVMELAYEFMDLAEKVRIEPEKITADRVEQVLYHVGRREKFPLLLGLL
RKEPQPQRILLFVNTKREGEHLAERLKANDFKAAVISGDIPQRKRMRILEDFKESRLNFL
VATDVASRGIHVDDVTHVVNYDLPQDADDYVHRIGRTARAGAAGKAISFADEDLVFHLPD
IEEYIGRKIPSTFPEEEDFVRDYKRSAPTHRKAPVPEKQAGHGHGDKRPRRRGPKRRGGK
GPN
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaccgaactgaatctgcccgccgaggtcctgaagggagtcgcggcggtcggc
ttcaccgagcttaccccggtccaggaggagtcgatccccctcgctctcgccggcaaggat
gtcgccgcccaggcgcagacggggaccggcaagaccgcggcctttttgatctccctcttt
acccgcctgctgcgcagtgaccggggtagcggccgcgacccccgggcgctggtgctcgcc
ccgacccgggaactggtgatgcagatctgcgaggacgccaaggggctcggggtcggctgc
cccttccgcgtcgaggcgatctttggcggggtcgattacgacaagcagcgccaggcgctc
aaggacggcgtcgacatcatcgtcgcgaccccgggccggctgatcgactacgccaagcag
cgggtcttctccttcaacagcatcgaggcggtggtcatcgacgaggccgaccgcatgttc
gacatggggttcatcaaggacctgcgttatatcctgcgcaagctccccccttttgaagag
cggcagacgatgctcttttcggcgaccctctcgccgcgggtgatggagctcgcctacgag
ttcatggacctggccgagaaggtgcggatcgagccggagaagatcaccgccgaccgggtc
gaacaggttctctaccacgttggccggcgcgagaagttcccgctcctgctcggcctgctc
cgcaaagagccgcaaccgcagcgaatcctcctcttcgtcaacaccaagcgcgagggggag
catctcgccgagcgcctcaaggcgaacgatttcaaggccgcggtgatttccggcgacatc
ccgcagcgcaagcggatgcgcatcctcgaggatttcaaggagagccggctcaacttcctc
gttgccaccgatgtcgcttcccgggggattcatgtcgatgacgtgacccatgtcgtcaat
tatgacctgccccaggatgccgacgactacgtccaccgtatcggccgtaccgcccgggcc
ggtgccgctggcaaggcgatcagctttgccgacgaggatctcgtcttccacctccccgac
atcgaggagtatatcggccgcaagatcccgagcacctttccggaggaggaggacttcgtc
cgggattacaagcggagcgcgccgacccatcgcaaggcgccggtgccggaaaagcaggcc
ggtcatggtcacggcgacaagcgcccgcgccggcgcggaccgaaacgccgtggcggcaag
ggcccgaattga
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