Desulfuromonas sp. DDH964: DBW_3000
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Entry
DBW_3000 CDS
T04368
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
deu
Desulfuromonas sp. DDH964
Pathway
deu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBW_3000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deu03019
]
DBW_3000
03400 DNA repair and recombination proteins [BR:
deu03400
]
DBW_3000
Enzymes [BR:
deu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBW_3000
Messenger RNA biogenesis [BR:
deu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBW_3000
DNA repair and recombination proteins [BR:
deu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DBW_3000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMV73308
UniProt:
A0A143BAD4
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All DBs
Position
complement(3180185..3181993)
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AA seq
602 aa
AA seq
DB search
MNQPQAAEVLQSIFGYGTFRPYQEEIIRTLIAGEDAFVLMPTGGGKSLCYQIPALCRPGV
GIVVSPLISLMKDQVDALLANGVRAAFYNSSLKSAEAKQVLAKLHAGQLDLLYLAPERLL
SEEFLARLQEVPIALFAIDEAHCVSQWGHDFRPEYIQLGRLRRDFPGIPLLALTATADPQ
TRGDILDRLQLRQARIFIAGFDRPNIRYHVVDKQKPFAQLQAFLKGRRGEAGIVYALSRK
RVEEVASKLAAAGIRAAAYHAGLPDAERRRVQEAFLRDDLQIVVATVAFGMGIDKPNVRF
VVHYDLPKNIESYYQETGRAGRDGLPSEALLLFGYGDVAIARGLIERGGNPEQKRVELHK
LNAMVGFAEAQNCRRRVLLGYFGEHLAEDCGNCDVCDSPPESYDATIDAQKALSCVYRVG
QRFGVGHVVEVLRGAASQRIQELGHDRLSTYGLGADQPAEAWSGLILQLIHLGYLRQDVA
NYSVLKLTEAARPLLRGEARLTLAKPRLKVAAQKKPARKVASDLTYDEALFDNLRALRKR
LADDAGVPPYVIFSDVTLVEMAAYLPESPQALLGVTGVGKLKLQKFGGEFLEEIRSYLAG
RG
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaccgcaagctgccgaggtgctgcagtcgatcttcggctacggcaccttccgc
ccctaccaggaagagatcatccgcaccctgatcgccggtgaggatgctttcgtcctgatg
ccgaccggcggcggcaagtccctttgctaccagattccggcgctctgtcggccgggggtg
gggattgtcgtctcgccgctgatctcactgatgaaggaccaggtcgacgccctgctcgcc
aacggcgtgcgcgccgccttttacaactcctcgctgaagagcgccgaggcgaagcaggtc
ctcgccaagctccatgccggtcagctcgaccttctctatctcgcccccgagcgactgctg
agcgaagagttcctggcgcgactgcaggaggtgccgatcgccctcttcgccatcgacgag
gcccactgcgtctcccagtgggggcacgacttccgccccgagtatatccagctcggccgt
ttgcgccgggactttcccggcattccgctcctcgccctcaccgccaccgccgacccccag
acccgcggcgatatcctcgaccggctgcagctgcgccaggcccggatcttcatcgccggt
ttcgaccgccccaacatccgctaccacgttgtcgacaagcagaaacccttcgcccagctg
caggcctttctgaaagggcggcgcggggaggccggcatcgtctacgccctctcccgcaag
cgggtcgaggaagtcgccagcaagctggcggcggcagggatcagggcggccgcctaccat
gccggactcccggatgcggaacggcggcgggtgcaggaggcctttctgcgcgacgatttg
cagatcgtcgtggcgacggtcgctttcggcatggggatcgacaagccgaacgtgcgtttt
gtcgtccactacgacctgccgaagaatatcgaaagctactaccaggagaccggtcgtgcc
ggccgcgacgggctgccgagcgaggcgctgctcctctttggctacggcgatgtcgccatc
gcccgcggtctgatcgagcggggagggaacccggagcagaagcgggtcgagctccacaag
ttgaacgccatggtcggttttgccgaagcgcagaactgccggcgtcgggtgctgctcggc
tattttggcgagcacctcgccgaggactgcggcaactgcgatgtctgcgactctcctccg
gagagctacgacgccaccatcgatgcccagaaggccctctcctgcgtctaccgggtcggc
cagcgcttcggcgtcggtcacgtcgtcgaggtgctgcgcggcgccgcctcccagcggatc
caggagctcgggcacgaccggctctccacctacggcctcggcgccgatcagccggccgaa
gcctggagcgggctgatcctccagctgatccatctaggctacctgcgccaggacgtcgcc
aactactcagtgctgaaactgaccgaggcggcgcggccgctgctgcgcggcgaggcgcgc
ctgaccctggccaagccgcgcctgaaggtggctgcgcagaaaaaaccggcccgcaaggtc
gcttcggaccttacttacgacgaggccctcttcgacaatctgcgggcgctgcgcaagcgt
ctggccgacgatgccggggtgccgccctacgtcatcttcagcgatgtgaccctggtcgaa
atggcggcctacctgccagagagtccgcaggcgctcctcggcgtcaccggcgtcggcaag
ctcaagttgcagaaattcggcggggagtttctggaggagattcgcagctacctggcggga
cgggggtga
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