Desulfuromonas sp. DDH964: DBW_3579
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Entry
DBW_3579 CDS
T04368
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
deu
Desulfuromonas sp. DDH964
Brite
KEGG Orthology (KO) [BR:
deu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
deu03016
]
DBW_3579
Enzymes [BR:
deu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DBW_3579
Transfer RNA biogenesis [BR:
deu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DBW_3579
Prokaryotic type
tRNA splicing ligases
DBW_3579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMV73877
LinkDB
All DBs
Position
3812169..3813611
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AA seq
480 aa
AA seq
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MGMTLEQIDDCRWRIPRTGAMRTEGLVFASEAMIGALQQEEALEQVRNVATLPGIVGTSL
AMPDIHWGYGFPIGGVAAFDADSGVVSPGGVGYDINCGVRLLRSALTAEEVTPHLSGLAD
ALFRNVPSGIGSQRRDLRLTVAEERRVLAQGARWAVAKGFGNKNDLEQIEEGGALPDADP
DLVSDRALERGRAQLGTLGSGNHFLEIQRVDEIFDPAAAEVLGLFRGQVTVTIHTGSRGL
GYQVCDDWIRTMLDASRRYGIDLPDRQLCCAPLTSPEGRDYLAAMAAAANFAFANRQLIT
AWVRESFAQVLGKGDALLRLSVVYDVCHNIAKWETHQVGGRPRRLCVHRKGATRAFPPGH
PQTPAAYRSVGQPVLIPGDMGRYSFVLVGTSGALAETFGSTCHGAGRLLSRHAAKRLARG
RNIPAELGSQGILLRAAGGATVAEEIPEAYKDVAEVVDIVARAGIGHIVARLRPLAVIKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggcatgacgcttgagcagattgatgactgccgctggcgcattccccgcacgggtgcg
atgcggaccgaaggcctcgtcttcgccagcgaggcgatgattggtgccctgcagcaggag
gaagcgctcgaacaggtgcgcaacgtcgccaccctgccgggaatcgtcggcacctcgctg
gcgatgcccgacatccactggggttacggctttccgatcggcggagtcgccgcctttgac
gccgactccggggtggtctctcccggcggggtcggctacgacatcaactgcggcgtccgc
ctgctgcgcagcgccctcaccgccgaggaggtcaccccgcacctttccgggctggcggac
gcactctttcgcaacgtcccgagcggtatcggctcccagcgccgggacctgcggctgacg
gtcgccgaagaacgcagggtcctggcccagggggcccgctgggcggtggccaaggggttc
ggcaataaaaacgaccttgagcagatcgaagaggggggagcgctccccgacgccgatccc
gatctcgtctccgaccgcgccctggagcgcggtcgtgctcagctcggcacccttggcagc
ggcaaccattttctcgaaatccagcgtgtcgacgagattttcgacccggccgccgccgag
gtcctcggcctctttcgcggccaagtcacggtcaccattcacaccggcagtcgggggctc
ggctaccaggtgtgtgacgactggattcgcaccatgctcgacgccagccgccgctacggg
atcgatctccccgaccggcaactttgctgcgcccccctgaccagcccggaagggcgggac
tacctggcggcgatggcggccgcggccaacttcgccttcgccaaccgccagctgatcacc
gcctgggtgcgggaatccttcgcccaggtccttgggaaaggggacgccctgctccgcctc
tcggtggtctatgacgtctgccacaatattgccaagtgggagacccaccaggtcggcggc
agaccgcgacgcctctgcgtacatcgcaagggggcgacccgggccttcccgcccggccac
ccccagaccccggcggcctaccggagcgtcggccagccggtgctgatccccggggacatg
ggtcgctactcctttgttctcgtcggcacctcgggagcactggcggagaccttcggctcg
acctgccacggcgccggccgtctcctctcccgccatgccgccaaacgccttgcccggggt
cgcaacatcccggccgaactggggtcccaagggatactgctccgcgccgcgggaggcgcg
actgtggccgaagagatccccgaagcctacaaggacgtcgccgaggtggtcgacatcgtc
gcccgggccggcattggccatatcgtcgcgcggctgcggccgctggcggtcatcaagggt
tag
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