Desulfuromonas sp. DDH964: DBW_3648
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Entry
DBW_3648 CDS
T04368
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
deu
Desulfuromonas sp. DDH964
Pathway
deu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
deu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DBW_3648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
deu03400
]
DBW_3648
Enzymes [BR:
deu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBW_3648
DNA repair and recombination proteins [BR:
deu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DBW_3648
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
MFD_D3
RecG_dom3_C
UB2H
AAA_25
AAA_22
BTH_I2711-like
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMV73945
UniProt:
A0A143BC79
LinkDB
All DBs
Position
complement(3893065..3896556)
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AA seq
1163 aa
AA seq
DB search
MDSNPIDHHQVAHATRKAFVEGVLATRGRSEVLGLVGTSGAWLLAGLLAASNETLLILTA
GQKEAARLAADLAFCHGRSGEIFHFPHWEVGPFEPLAPHPEVEAERLAALAALHEGRARA
LVVPVRSLLQRVIPRQALAGLCERLVVEEEYPRPPLLQRLLELGYQAVPLVEDRGTFSVR
GDLLDIFPPTRSTPVRIEFFGDYIERMRPFDPSTQRSGNEELEELMLLPARELVLAGDHL
ETFARKLKERCDTLGLPRTVREAVLDEAREGILAPGRAFLLPCNYPALDSLTAYAPSARW
VVVDPPAILQEADRFATEVAEGEARAAHRGEPFVAAADLFLTPRDLERELAGRPRIDFSP
LELYQLDAEHPVYRVRAEGNLDLRRGLGDGADGLAPLAGQLRGWLTEGWRVLVVCHQRGQ
AERLADLLQGEQLPIDLDPAAGLAQVRPGRLLLTVGDLGAGFRLPDERLVVIAEEEIFGP
RVRRRDRGAARAKALLSTLAELREGDFAVHADHGIARFRGLVHLVTGQTEGDYLLLEYAG
DDRLYVPVDRIEKVSKYVGGEGHQPHLDKMGGQGWEKAKLKARAAVEELARELLRIYARR
AMNHRPPYPPPDRHFREFEAGFPYEETADQQAAIDDVLAGLQAEQPMDRLICGDVGYGKT
EVAIRAAFKVAMDGRQVAVLVPTTVLAKQHWETFRSRFAGTPVEVEMVSRFRTPAEQKLI
LERTAAGKVDVLIGTHRLLQRDVKFRDLGLVIVDEEQRFGVAHKERLKKLRAEVDLLTLT
ATPIPRTLHMSLMGIRDLSVIDTPPVDRLAVRTYVTRFDEELIREAILRELRRGGQVFFV
HNRVQSINAQADFLRALVPEAKVAVGHGQMGEKALEEVMLGFIEGTSNVLVCSTIIENGI
DIPRANTIIINRADCFGLAQLYQLRGRVGRSSQRAYAYLLIPGEGNLTREARERLKVLQE
LTELGAGFRIASHDLELRGAGELLGPRQAGQVAAIGFEMYAELLDETINELRGLAREERV
DPEIRLGLSAYLPESYVPDPNQRLVLYKQLASASDEETIYLATDELRDRFGEIPPPGQLL
LEVMKLRVLLKRLMIELAEYDGRQLTLAFHGATPVAPEKILGLLTDPAGRYQFSPDFRLT
IRTGRLTPEALLETAKKELRGFL
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggattcgaatccgatcgaccatcatcaggttgcccacgccacccgcaaagcctttgtc
gagggggtgctcgccactcgggggcgcagcgaggttctcggcctggtcggcaccagcggc
gcctggctgctggccgggctgctggcggccagcaatgaaaccctgctgattctgaccgcc
ggacagaaggaagcggcccggctggcggcggatcttgccttctgtcatggccgcagcggc
gaaatcttccatttcccgcactgggaggtcggacccttcgagccgctggcgccgcacccg
gaagtcgaggcggagcgccttgccgctctcgccgcccttcacgaagggcgggcgcgggcg
ttggtggtgccggtgcggagcctgctgcagcgggtgattccccgccaggcgctggccgga
ctttgcgaacggctggtggtggaggaggaatatccccgccctcccctgctgcaacggctc
cttgagctcggctaccaggccgtccccctggtcgaggatcgcggcaccttctcggtgcgg
ggcgatctgctcgacatcttcccgccgacccgctccaccccggtgcgcatagagtttttc
ggggactacatcgagcgcatgcgcccctttgacccttccacccagcgttcgggcaacgag
gaactcgaggagctgatgctccttccggcccgggagctggtcctcgccggcgaccatctc
gaaaccttcgcccgcaaactcaaggagcgctgcgacaccctcggcctgccgcggaccgtc
cgcgaggcggtcctcgatgaggcccgggaaggaatcctggcgcccggacgggcgtttctc
ctcccctgcaactatcccgcgctcgactccctgaccgcctatgcccccagcgcccgctgg
gtcgtcgtcgacccgccggccattctccaggaagccgaccgtttcgcgaccgaggttgcc
gagggggaagcccgtgccgctcatcgcggcgagccctttgtcgccgccgccgatctcttc
ctgaccccccgggatctggagcgggagctggccggccggccgcggatcgatttttctccc
ctggagctctaccagctcgatgcggaacacccggtctaccgggtgcgcgccgaggggaat
ctggatctgcggcgcggcctcggcgatggcgcggacggccttgctcctttggccggccag
ctgcggggctggctgacggaggggtggcgggtgctggtggtctgccatcagcgcggccag
gccgagcgccttgccgatctgctgcagggggagcagctgccgatcgatctcgatccggcg
gccgggctggcgcaggtgcgtcccggacggctcctgctcaccgtcggcgaccttggcgcc
ggcttccgcctccccgatgagcggctggtggtgatcgccgaggaggagatcttcggtccc
cgggtgcggcgccgcgatcgcggcgccgcgcgggccaaggcgctcctctccaccctcgcc
gaactgcgcgaaggtgattttgccgtgcatgccgatcacggcatcgcccgctttcgcggt
ctcgttcacctcgtgaccggccagaccgaaggggactacctcctcctcgaatatgccggg
gacgatcgcctctacgttccggtcgatcgcatcgaaaaggtctccaagtacgtcgggggg
gaggggcaccagccccacctcgacaagatgggcggccagggctgggagaaggcgaagctc
aaggcgcgcgcggcggtcgaagagctggcgcgggagctgctgcgcatctatgcccggcgg
gcgatgaaccaccgccccccctacccccctcccgaccgccacttccgggagttcgaagcg
gggtttccctacgaggagaccgccgaccagcaggccgcgatcgacgacgtcctcgccggg
ttgcaggcggaacagccgatggaccggctgatctgcggcgacgtcggctacggcaagacc
gaagtggcgatccgtgccgccttcaaggtcgccatggacggccgccaggtagcggtgctg
gtgccgaccacggtcctcgccaagcagcactgggagaccttccggagccgctttgccggg
accccggtcgaggtcgagatggtctcccggttccgcaccccggcggagcagaagctgatt
ctggagcggactgccgccggcaaggtcgatgtcctgatcggcacccaccggctgctgcag
cgggatgtcaaattcagggacctcggcctggtgatcgtcgacgaggagcagcgcttcggg
gtggcccacaaagagcgcctgaagaaactgcgcgccgaggtcgacctgttgacgctgact
gcgacgccgattccgcgcaccctgcacatgagcctgatggggattcgcgacctgtcggtg
atcgacaccccgccggtcgaccggctggcagtgcgcacctacgtcacccgcttcgacgag
gagctgattcgcgaggcgatcctgcgggagctgcgccgcggcggccaggtcttcttcgtc
cataaccgggtgcagagcatcaacgcccaagccgatttcctgcgcgccctcgttcccgag
gcgaaggtcgccgtcggccacggccagatgggggagaaggctctggaggaggtgatgctc
ggctttatcgaggggacgagcaacgtcctggtctgcagcaccatcatcgagaacggcatc
gatatcccgcgcgccaacaccatcatcatcaaccgcgccgactgcttcggcctggcgcag
ctctaccagctgcgcggccgggtcggtcgctcgagccagcgtgcctatgcctacctgctg
atccccggcgaagggaacctgacccgggaagcccgggaacggctcaaggtcctgcaggag
ctgaccgagctcggcgccggcttccgcatcgccagccacgacctggaactgcggggcgcc
ggcgaactcctcggtccccgtcaggccggccaggtggcggcgatcggctttgagatgtac
gccgaactcctcgacgagacgatcaacgagctgcggggcctggcccgggaggagcgcgtc
gacccggaaatccggctcggtctctccgcctacctgccggagagttacgtccccgatccc
aaccagcggctggtcctctacaagcagctggccagtgctagcgacgaggagacgatctac
ctcgccaccgatgagctgcgcgaccgctttggcgagatcccgccccccgggcagctcctt
ctcgaggtgatgaaactgcgcgtccttctcaagcggttgatgatcgagctggcggaatac
gacggccgccagctgaccctggcgtttcacggggcgaccccggtggcgccggaaaagatt
ctcggcctgctcaccgaccccgcggggcgctaccagttcagccccgatttccggctcacc
atccgcaccgggcggctcaccccggaggcgctgctggagacggccaaaaaagaattgcgc
ggttttctttga
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integrated database retrieval system
